View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13392_low_20 (Length: 286)

Name: NF13392_low_20
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13392_low_20
NF13392_low_20
[»] chr1 (12 HSPs)
chr1 (64-178)||(40503429-40503542)
chr1 (189-236)||(14512669-14512716)
chr1 (189-245)||(46312065-46312121)
chr1 (186-245)||(46525844-46525903)
chr1 (191-244)||(46524542-46524595)
chr1 (189-247)||(2425469-2425527)
chr1 (189-247)||(18606929-18606987)
chr1 (189-247)||(24961953-24962011)
chr1 (189-247)||(28920897-28920955)
chr1 (202-247)||(28552594-28552639)
chr1 (190-247)||(43706655-43706712)
chr1 (187-247)||(43706899-43706959)
[»] chr3 (9 HSPs)
chr3 (189-276)||(26723875-26723962)
chr3 (187-247)||(26722531-26722591)
chr3 (185-245)||(10584084-10584144)
chr3 (186-245)||(32829737-32829796)
chr3 (201-245)||(10083285-10083329)
chr3 (201-245)||(10190210-10190254)
chr3 (180-247)||(3329059-3329126)
chr3 (186-245)||(51219459-51219518)
chr3 (189-245)||(51220604-51220660)
[»] chr5 (6 HSPs)
chr5 (189-247)||(3597323-3597381)
chr5 (186-276)||(3598893-3598983)
chr5 (189-245)||(124531-124587)
chr5 (187-245)||(5504138-5504196)
chr5 (202-247)||(5033735-5033780)
chr5 (202-242)||(5034721-5034761)
[»] chr4 (11 HSPs)
chr4 (187-245)||(33997898-33997956)
chr4 (182-245)||(8747684-8747747)
chr4 (189-245)||(8749048-8749104)
chr4 (201-245)||(9942338-9942382)
chr4 (189-247)||(55780387-55780445)
chr4 (189-247)||(55844567-55844625)
chr4 (186-247)||(9397435-9397496)
chr4 (186-247)||(19232590-19232651)
chr4 (189-245)||(8896955-8897011)
chr4 (187-247)||(25011733-25011793)
chr4 (185-245)||(48157680-48157740)
[»] chr7 (6 HSPs)
chr7 (186-245)||(35080280-35080339)
chr7 (189-241)||(9805432-9805484)
chr7 (189-238)||(23621990-23622039)
chr7 (175-247)||(20636605-20636677)
chr7 (175-247)||(20638477-20638549)
chr7 (189-245)||(35081603-35081659)
[»] chr6 (4 HSPs)
chr6 (186-245)||(22417655-22417714)
chr6 (177-247)||(20409055-20409125)
chr6 (189-247)||(32451726-32451784)
chr6 (186-247)||(10120172-10120233)
[»] chr2 (6 HSPs)
chr2 (186-245)||(27553809-27553868)
chr2 (189-245)||(12812836-12812892)
chr2 (189-245)||(27552452-27552508)
chr2 (189-247)||(10851913-10851971)
chr2 (186-247)||(28851672-28851733)
chr2 (188-236)||(24192244-24192291)
[»] chr8 (5 HSPs)
chr8 (189-247)||(38612219-38612277)
chr8 (189-247)||(38613417-38613475)
chr8 (182-247)||(19392812-19392877)
chr8 (176-237)||(26546329-26546390)
chr8 (183-247)||(21666519-21666583)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 40503429 - 40503542
Alignment:
Q  64 aaccactctcaagtatgcaaagtatatatttggtatttcttctcaaatttatannnnnnngacaatatgttctctttgaccgctgtattttgacaattga 163  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||| |||||||||| ||||||||    
T  40503429 aaccactctcaagtatgcaa-gtatatatttggtatttcttctcaaatttatatttttttgacaatatgttctctttgacagctgtatttttacaattga 40503527  T
Q  164 aagactatatattta 178  Q
    | ||| |||||||||    
T  40503528 atgacaatatattta 40503542  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 14512716 - 14512669
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgatttt 236  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14512716 ggctaaactacagttttggccccctaagtttactaatgttgcgatttt 14512669  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 46312065 - 46312121
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||||||||| |||||||| ||||| ||||||| |||||||||||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggcccccta 46312121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 46525903 - 46525844
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||||||| |||||||||||||||||||||||| | ||||||| |||||||||| ||||    
T  46525903 tttggctaatctacagttttggccccctaagtttgccaatgttgcgattttggcctccta 46525844  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 46524542 - 46524595
Alignment:
Q  191 ctaaactacagttttggccccctaagtttactaatgttgtgattttggccccct 244  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||| |||||    
T  46524542 ctaaactacagttttggccccctaagtttaccaatgttgcaattttggtcccct 46524595  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 2425527 - 2425469
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||| || |||| |||||||| ||||  |||||||| |||||||||||||||||    
T  2425527 ggctaaactgcactttttgccccctatgtttcataatgttgcgattttggccccctatt 2425469  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 18606987 - 18606929
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||||| |||| | |||||||||||   ||||||||||||||| |||||||||    
T  18606987 ggctaaactacacttttcgacccctaagttttaaaatgttgtgattttgaccccctatt 18606929  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 24961953 - 24962011
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||| || |||| |||| ||||||||   |||||||||||||||||||||||||    
T  24961953 ggctaaacttcacttttcgccctctaagtttcaaaatgttgtgattttggccccctatt 24962011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 28920955 - 28920897
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||| || |||| |||||||||||||   ||||||| |||||||||||||||||    
T  28920955 ggctaaacttcacttttcgccccctaagtttcaaaatgttgcgattttggccccctatt 28920897  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 28552639 - 28552594
Alignment:
Q  202 ttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||| |||||||||||||   |||||||||||||||||||||||||    
T  28552639 tttttgccccctaagttttaaaatgttgtgattttggccccctatt 28552594  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 43706655 - 43706712
Alignment:
Q  190 gctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||| || |||| |||||||| ||||  |||||||| |||||||||||||||||    
T  43706655 gctaaactgcacttttcgccccctatgtttcataatgttgcgattttggccccctatt 43706712  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 43706959 - 43706899
Alignment:
Q  187 ttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||||| || |||| ||||||||| |||   ||||||| |||||||||||||||||    
T  43706959 ttggctaaactccactttttgccccctaatttttaaaatgttgcgattttggccccctatt 43706899  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 26723962 - 26723875
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctattnnnnnnnntgacacttttggtcccctatg 276  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||        |||||||||||||||||||||    
T  26723962 ggctaaactacagttttggccccctaagtttactaatgttgcaattttggccccctattaaaaaaaatgacacttttggtcccctatg 26723875  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 26722531 - 26722591
Alignment:
Q  187 ttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  26722531 ttggctaaactacagttttggccccctaagtttaccaatgttgcgattttggccccctatt 26722591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 10584144 - 10584084
Alignment:
Q  185 atttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||||||||||||||||||||  ||||||||||| | ||||||| |||||||||||||||    
T  10584144 atttggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggcccccta 10584084  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 32829737 - 32829796
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||||||||||||||||||| |||||||||||| | ||| ||| |||||||||||||||    
T  32829737 tttggctaaactacagttttgaccccctaagtttgccaattttgcgattttggcccccta 32829796  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 10083285 - 10083329
Alignment:
Q  201 gttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||    
T  10083285 gttttcgccccctaagttttcaaatgttgtgattttggcccccta 10083329  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 10190210 - 10190254
Alignment:
Q  201 gttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||    
T  10190210 gttttcgccccctaagttttcaaatgttgtgattttggcccccta 10190254  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 3329126 - 3329059
Alignment:
Q  180 tttatatttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||| |||||||||||| || |||| |||| ||||||||   ||||||| |||||||||||||||||    
T  3329126 tttatttttggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctatt 3329059  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 51219459 - 51219518
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||||||||||||||||||| || |||||||||   |||||||  ||||||||||||||    
T  51219459 tttggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggcccccta 51219518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 51220660 - 51220604
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||||||||| |||| |||||||   ||||||| |||||| ||||||||    
T  51220660 ggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagcccccta 51220604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 3597323 - 3597381
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  3597323 ggctaaactacagttttggccccctaagtttactaatgttgcgattttggccccttatt 3597381  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 276
Target Start/End: Complemental strand, 3598983 - 3598893
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctattnnnnnnnntgacacttttggtcccctatg 276  Q
    |||||||||||||||||||||| ||||||| ||||| ||||||| |||||||||||||||||        ||||| |||||||||||||||    
T  3598983 tttggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggccccctattaaaaaaaatgacaattttggtcccctatg 3598893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 124587 - 124531
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||||||||| || | ||||||| | ||||||| |||||||||||||||    
T  124587 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggcccccta 124531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 5504196 - 5504138
Alignment:
Q  187 ttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||||||||||| || | ||||||| | ||||||| ||||||| |||||||    
T  5504196 ttggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgacccccta 5504138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 5033735 - 5033780
Alignment:
Q  202 ttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||||||||||||  ||||||| |||||||||||| ||||    
T  5033735 ttttggccccctaagtttaaaaatgttgcgattttggccccttatt 5033780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 5034761 - 5034721
Alignment:
Q  202 ttttggccccctaagtttactaatgttgtgattttggcccc 242  Q
    |||||||||||||||||||  ||||||| ||||||||||||    
T  5034761 ttttggccccctaagtttaaaaatgttgcgattttggcccc 5034721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 33997956 - 33997898
Alignment:
Q  187 ttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||    
T  33997956 ttggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgacccccta 33997898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 8747684 - 8747747
Alignment:
Q  182 tatatttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||| |||||||||||||||||| |||| ||||||| | ||||||| |||||||||||||||    
T  8747684 tatattaggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggcccccta 8747747  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 8749104 - 8749048
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||| ||||| |||| ||||||| | ||||||| |||||||||||||||    
T  8749104 ggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggcccccta 8749048  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 9942338 - 9942382
Alignment:
Q  201 gttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||||||||||||||| | | |||||||||||||||||||||||    
T  9942338 gttttggccccctaagtatccaaatgttgtgattttggcccccta 9942382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 55780387 - 55780445
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||| || |||| ||||| ||||||| | ||||||| |||||||||||||||||    
T  55780387 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggccccctatt 55780445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 55844567 - 55844625
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||| || |||| ||||| ||||||| | ||||||| |||||||||||||||||    
T  55844567 ggctaaacttcatttttcgccccttaagttttcaaatgttgcgattttggccccctatt 55844625  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 9397496 - 9397435
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||||| || ||||  ||||||||||||   ||||||| |||||||||||||||||    
T  9397496 tttggctaaactgcacttttcaccccctaagttttaaaatgttgggattttggccccctatt 9397435  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 19232651 - 19232590
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||||| || |||| |||||||||||||   |||||||||||||||| | ||||||    
T  19232651 tttggctaaactccactttttgccccctaagtttcaaaatgttgtgattttggtcacctatt 19232590  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 8897011 - 8896955
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||||||||| | |||||||||| | ||||||  |||||||| ||||||    
T  8897011 ggctaaactacagttttgactccctaagtttgccaatgttacgattttggtccccta 8896955  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 25011733 - 25011793
Alignment:
Q  187 ttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||||| || |||| | |||||||||||   ||||||| |||||||||||||||||    
T  25011733 ttggctaaactccacttttcgtcccctaagtttcaaaatgttgcgattttggccccctatt 25011793  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 48157740 - 48157680
Alignment:
Q  185 atttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||||||||||| |||||||| |||||||| |||  ||| | || |||||||||||||||    
T  48157740 atttggctaaactgcagttttgaccccctaactttcataaaggtgcgattttggcccccta 48157680  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 35080280 - 35080339
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||||||||||||||||||| |||||||||||| | ||||||| |||||||| ||||||    
T  35080280 tttggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtccccta 35080339  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 9805484 - 9805432
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccc 241  Q
    |||||||||||||||||| |||||||||||| | ||||||| |||||||||||    
T  9805484 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggccc 9805432  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 23622039 - 23621990
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttgg 238  Q
    ||||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  23622039 ggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 20636605 - 20636677
Alignment:
Q  175 tttattttatatttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||| || ||||||||| || |||| |||| ||||||||   ||||||| |||||||||||||||||    
T  20636605 tttattttattttaggctaaacttcactttttgccctctaagttttaaaatgttgcgattttggccccctatt 20636677  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 20638477 - 20638549
Alignment:
Q  175 tttattttatatttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||| || ||||||||| || |||| |||| ||||||||   ||||||| |||||||||||||||||    
T  20638477 tttattttattttaggctaaacttcactttttgccctctaagttttaaaatgttgcgattttggccccctatt 20638549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 35081659 - 35081603
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||||||||| ||||||||||||   ||||||| ||||||||| |||||    
T  35081659 ggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgcccta 35081603  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 22417655 - 22417714
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||  |||||||||||||||    
T  22417655 tttggttaaactacagttttgaccccctaagtttgctaatgttacgattttggcccccta 22417714  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 20409055 - 20409125
Alignment:
Q  177 tattttatatttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||||| ||||||||| |||||||| |||||||| |||   |||| || |||||||||||||||||    
T  20409055 tattttatattaggctaaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 20409125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 32451726 - 32451784
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||| || |||| |||| ||||||||   |||||||||||||||||||||||||    
T  32451726 ggctaaacttcacttttcgccctctaagtttcaaaatgttgtgattttggccccctatt 32451784  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 10120172 - 10120233
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||||| ||| ||||||||||||||||||   ||||||| |||||||  ||||||||    
T  10120172 tttggctaaacaacaattttggccccctaagtttgtcaatgttgcgattttgatcccctatt 10120233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 27553868 - 27553809
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    ||||||||||||||||||||  |||||||||||| ||||||||| |||||||||| ||||    
T  27553868 tttggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggcctccta 27553809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 12812836 - 12812892
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||| ||||||||||| || | ||||||| ||||||||| |||||||||||||||    
T  12812836 ggctaagctacagttttgacctcttaagtttgctaatgttgagattttggcccccta 12812892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 27552452 - 27552508
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggcccccta 245  Q
    |||||||||||||||||| |||||||| ||| | ||||||| ||||||||| |||||    
T  27552452 ggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctcccta 27552508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 10851913 - 10851971
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||||||||||| |||||||| ||||  ||||||| ||||||  |||||||||    
T  10851913 ggctaaactacagttttgaccccctaactttatcaatgttgcgattttaaccccctatt 10851971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 28851733 - 28851672
Alignment:
Q  186 tttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||||| |||||||| |||||||| |||   ||||||| ||||||| |||||||||    
T  28851733 tttggctaaactgcagttttgaccccctaactttcacaatgttgcgattttgaccccctatt 28851672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 24192244 - 24192291
Alignment:
Q  188 tggctaaactacagttttggccccctaagtttactaatgttgtgatttt 236  Q
    |||||||||||||||||||| |||| |||||| ||||||||| ||||||    
T  24192244 tggctaaactacagttttgg-ccccaaagtttgctaatgttgcgatttt 24192291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 38612219 - 38612277
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||| |||||||| |||||||| |||   ||||||| |||||||||||||||||    
T  38612219 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctatt 38612277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 38613475 - 38613417
Alignment:
Q  189 ggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    ||||||||| |||||||| |||||||| |||   ||||||| |||||||||||||||||    
T  38613475 ggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctatt 38613417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 19392877 - 19392812
Alignment:
Q  182 tatatttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||| ||||||||| || |||| |||| ||||||||   ||||||| |||||||||||||||||    
T  19392877 tatattaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctatt 19392812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 26546390 - 26546329
Alignment:
Q  176 ttattttatatttggctaaactacagttttggccccctaagtttactaatgttgtgattttg 237  Q
    ||||||||| |||| || || ||| ||||||||||||||||| | | |||||||||||||||    
T  26546390 ttattttatttttgacttaattactgttttggccccctaagtatccaaatgttgtgattttg 26546329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 21666583 - 21666519
Alignment:
Q  183 atatttggctaaactacagttttggccccctaagtttactaatgttgtgattttggccccctatt 247  Q
    |||||||||| |||| || |||| ||||||| |||||   ||||||| |||||||||||||||||    
T  21666583 atatttggctgaactgcactttttgcccccttagtttcaaaatgttgcgattttggccccctatt 21666519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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