View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13392_low_21 (Length: 258)
Name: NF13392_low_21
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 242
Target Start/End: Original strand, 43462878 - 43463118
Alignment:
| Q |
2 |
gtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactcttaaagcaattgattttggattgtctagtttcttcaaaccaggtat |
101 |
Q |
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| T |
43462878 |
gtgatcttaagcctgaaaattttctttttgttgatggacatgaagattcaactcttaaagcaattgattttggattgtctagtttcttcaaaccaggtat |
43462977 |
T |
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| Q |
102 |
ggaaataatccccttctccaatttataccaatctccaaccatttcttgaaacctactattggtactgtaatgatcatatatagtctttgtgactaacaat |
201 |
Q |
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| T |
43462978 |
ggaaataatccccttctccaatttataccaatctctaaccatttcttgaaacctactattggtactgtaatgataatatatagtctttgtgactaacaat |
43463077 |
T |
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| Q |
202 |
cttcttttgcaggagaaaaatttagtgatgcggtaggaagt |
242 |
Q |
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| T |
43463078 |
cttctattgcaggagaaaaatttagtgatgcagtaggaagt |
43463118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 43453438 - 43453581
Alignment:
| Q |
1 |
cgtgatcttaagcctgaaaattttctttttgttgatggacatgaatattcaactcttaaagcaattgattttggattgtctagtttcttcaaaccaggta |
100 |
Q |
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| T |
43453438 |
cgtgatcttaagcctgaaaatttcctttttgttgatggagatgaagattccactcttatggcaattgattttggactgtccattttcttcaaaccaggtt |
43453537 |
T |
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| Q |
101 |
tggaaataatccccttctccaatttataccaatctccaaccatt |
144 |
Q |
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| T |
43453538 |
tggaaataatccccttctccaaattataccaatctctaaccatt |
43453581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 43454318 - 43454393
Alignment:
| Q |
152 |
acctactattggtactgtaatgatcatatatagtctttgtgactaacaatcttcttttgcaggagaaaaatttagtgat |
230 |
Q |
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| T |
43454318 |
acctactattggt---gtaatgatcatatatagtctttgttactaacaatcttcttttacaggggaaaaatttagtgat |
43454393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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