View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13392_low_5 (Length: 461)
Name: NF13392_low_5
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 5 - 454
Target Start/End: Complemental strand, 37395081 - 37394632
Alignment:
| Q |
5 |
caatagggaaccctaattttgggagcttcgaatttaaaaaatcatatagttatgtcacttatcatgatactgttgtaggtactgttccaatcgagtcaca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37395081 |
caatagggaaccctaattttgggagcttcgaatttaaaaaatcatatagttatgtcacttatcatgatactgttgtaggtactgttccaattgagtcaca |
37394982 |
T |
|
| Q |
105 |
attagtcccggcacgtagtgaaataaacgtgtccacttatacacttatgacggtgaataaattgataaataaccctgacttctggaaagaagttgtacca |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37394981 |
attagtcccggcacatagtgaaataaacgtgtccacttatacacttatgacggtgaataaattgataaataaccctgacttctggaaagaagttgtacca |
37394882 |
T |
|
| Q |
205 |
ggttataaatttacattgatatcaaaggctgaatttcctggtaaagtgattgttcttaagtagatcaaattgaagggaacggcttacaatacatgtaaca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37394881 |
ggttataaatttacattgatatcaaaggctgaatttcctggtaaagtgattgttcttaagtatatcaaattgaagggaacagcttacaatacatgtaaca |
37394782 |
T |
|
| Q |
305 |
tcacggttaatatggcgccgggttcccatgatgttaagagcatttgcaattctcaaatcaagattcattagtttggaaagactttaatctgagatgttga |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37394781 |
tcacggttaatatggcgccgggttcccatgatgttaagagcatttgcaattctcaaatcaagattcattagtttggaaagactttaatctgagatgttga |
37394682 |
T |
|
| Q |
405 |
tgtggaaccatatcagatgtggtgatacaaatagatttatggagtattat |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37394681 |
tgtggaaccatatcagatgtggtgatacaaatagatttatggagtattat |
37394632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 37361890 - 37361800
Alignment:
| Q |
52 |
agttatgtcacttatcatgatactgttgtaggtactgttccaatcgagtcacaattagtcccggcacgtagtgaaataaacgtgtccactt |
142 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||| | ||||||||| ||||||||| | || || |||||||||||||| || ||| |||||| |
|
|
| T |
37361890 |
agttatatcaattatcatgatactattgtaggcaatgttccaatagagtcacaacttgttccagcacgtagtgaaattaatgtgaccactt |
37361800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University