View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13392_low_6 (Length: 430)
Name: NF13392_low_6
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13392_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 10271838 - 10272242
Alignment:
| Q |
10 |
acatcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagtcaatcacttcaattt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10271838 |
acatcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagtcaatcacttcaattt |
10271937 |
T |
|
| Q |
110 |
tctcctcagctaacaacttggatgctgtttccactgatagttgcaaatcaacttctgtgttcttgtcaatgttgattgtaagcataagattgttcctgcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10271938 |
tctcctcagctaacaacttggatgctgtttccactgatagttgcaaatcaacttctgtgttcttgtcaatgttgattgtaagcataagattgttcctgcg |
10272037 |
T |
|
| Q |
210 |
aataaacctgatttctggagttgagttacgtaaccctgtaacctttactacatctcctagcttatacctgtataagcctgcaaattatacaagattaatt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10272038 |
aataaacctgatttctggagttgagttacgtaaccctataacctttactacatctcctagcttatacctgtataagcctgcaaattatacaagattaatt |
10272137 |
T |
|
| Q |
310 |
atcataaacaaaattagatttaaataaatctgaaaagatatcatgtggtaatattttatatttgaagtaacaaagattgaatctcagtaaattggtggat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10272138 |
atcataaacaaaattagatttaaataaatctgaaaagatatcatgtggtaatattttatatttgaagtaacaaagattgaatctcagtaaattggtggat |
10272237 |
T |
|
| Q |
410 |
gcaat |
414 |
Q |
| |
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||||| |
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| T |
10272238 |
gcaat |
10272242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 10283329 - 10283643
Alignment:
| Q |
13 |
tcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagtcaatcacttcaattttct |
112 |
Q |
| |
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||||| |||||||||||| |||||||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10283329 |
tcatcgcttgcttcgccattgatttcccaaaagataacatagtgtcctggttgtttagataaatcaatgtagctagtgtagtcaatcacttctattttct |
10283428 |
T |
|
| Q |
113 |
cctcagctaacaacttggatgctgtttccactgatagttgcaaatcaacttctgtgttcttgtcaatgttgattgtaagcataagattgttcctgcgaat |
212 |
Q |
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||| ||||||||||| ||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
10283429 |
ccttagctaacaactcggatgctgtttccaccgatagttgcagatcagcttctgagttcttgtcaatgttgatcgtaagcataagattgttcctgcgaag |
10283528 |
T |
|
| Q |
213 |
aaacctgatttctggagttgagttacgtaaccctgtaacctttactacatctcctagcttatacctgtataagcctgcaaattatacaagattaattatc |
312 |
Q |
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||||||||||||||||||||||||| | || || ||||||| || |||||||| ||| ||||||| ||||||||| |||||| | |||||| |||| || |
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| T |
10283529 |
aaacctgatttctggagttgagttatggaatcccataaccttcaccacatctccgagcctatacctatataagcctacaaattgtccaagatcaattgtc |
10283628 |
T |
|
| Q |
313 |
ataaacaaaattaga |
327 |
Q |
| |
|
| |||| ||||||| |
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|
| T |
10283629 |
actaacataattaga |
10283643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 10241698 - 10242017
Alignment:
| Q |
13 |
tcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagtcaatcacttcaattttct |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
10241698 |
tcatcacttgcttcaccactgatttcccaaaaaataacataatgtcctggttctttggataaatcaatgtagctagtatagtcaatcacttccattttct |
10241797 |
T |
|
| Q |
113 |
cctcagctaacaacttggatgctgtttccactgatagttgcaaatcaacttctgtgttcttgtcaatgttgattgtaagcataagattgttcctgcgaat |
212 |
Q |
| |
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| |||||||||||| |||| |||||||||||||||| ||| |||||| || |||||||| ||||||||||| ||||||||||| ||| |||| |||| |
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| T |
10241798 |
cttcagctaacaacatggaagctgtttccactgataattgtaaatcattctcagtgttcttatcaatgttgatagtaagcataaggttgctcctacgaag |
10241897 |
T |
|
| Q |
213 |
aaacctgatttctggagttgagttacgtaaccctgtaacctttactacatctcctagcttatacctgtataagcctgcaaattatacaagattaattatc |
312 |
Q |
| |
|
|||| |||||| ||||||||||||| | || || |||||||||| ||||| |||| | |||| ||||||||||||||| ||||| ||||||||||| || |
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| T |
10241898 |
aaacttgatttttggagttgagttatggaatcccataacctttaccacatcccctaacctatatctgtataagcctgcacattatccaagattaattgtc |
10241997 |
T |
|
| Q |
313 |
ataaacaaaattagatttaa |
332 |
Q |
| |
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| |||| ||||||| |||| |
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| T |
10241998 |
actaacataattagacttaa |
10242017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 10263670 - 10263952
Alignment:
| Q |
14 |
catcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgataaatcaatgtagctagtgtagtcaatcacttcaattttctc |
113 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10263670 |
catcacttgcttcaccgctgatttcccagaagataacatagtgtcctgggtcattggataaatcaatgtagctagtgtagtcaatcacttccattttctc |
10263769 |
T |
|
| Q |
114 |
ctcagctaacaacttggatgctgtttccactgatagttgcaaatcaacttctgtgttcttgtcaatgttgattgtaagcataagattgttcctgcgaata |
213 |
Q |
| |
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||||||||||| |||||| | |||||| || |||| ||| | |||| |||||||||||||||||||||||||| |||||||| ||| |||||| || | |
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| T |
10263770 |
ctcagctaacatcttggacgatgtttcgaccgatatttgtagatcattctctgtgttcttgtcaatgttgattgtgagcataaggttgctcctgcaaaga |
10263869 |
T |
|
| Q |
214 |
aacctgatttctggagttgagttacgtaaccctgtaacctttactacatctcctagcttatacctgtataagcctgcaaatta |
296 |
Q |
| |
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||| |||||||||||| ||| ||| | |||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
10263870 |
aacttgatttctggagctgacttatggaaccctattacctttactgcatctcctagcctatacctgtataagcctgcaaatta |
10263952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 289
Target Start/End: Complemental strand, 48369597 - 48369471
Alignment:
| Q |
163 |
tctgtgttcttgtcaatgttgattgtaagcataagattgttcctgcgaataaacctgatttctggagttgagttacgtaaccctgtaacctttactacat |
262 |
Q |
| |
|
|||||||||||||||||||| || | |||| |||| | |||| ||||||||| | | |||||||||||||||| | || || |||| ||||| |||| |
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|
| T |
48369597 |
tctgtgttcttgtcaatgtttatgtttagcagaagactactcctacgaataaactttagttctggagttgagttatggaatcccataacttttaccacat |
48369498 |
T |
|
| Q |
263 |
ctcctagcttatacctgtataagcctg |
289 |
Q |
| |
|
| |||||| ||||||||||||| |||| |
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|
| T |
48369497 |
cccctagcctatacctgtataaacctg |
48369471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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