View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13392_low_9 (Length: 399)

Name: NF13392_low_9
Description: NF13392
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13392_low_9
NF13392_low_9
[»] chr3 (6 HSPs)
chr3 (42-216)||(25333120-25333294)
chr3 (252-383)||(25333365-25333496)
chr3 (3-39)||(17551002-17551038)
chr3 (3-39)||(19176547-19176583)
chr3 (3-39)||(20611828-20611864)
chr3 (7-39)||(43012420-43012452)
[»] chr7 (5 HSPs)
chr7 (3-41)||(38306304-38306342)
chr7 (3-39)||(3867161-3867197)
chr7 (3-39)||(3419656-3419692)
chr7 (3-39)||(37795034-37795070)
chr7 (3-39)||(47325885-47325921)
[»] chr8 (5 HSPs)
chr8 (3-39)||(9519544-9519580)
chr8 (3-39)||(24995395-24995431)
chr8 (3-37)||(34389005-34389039)
chr8 (3-39)||(16457461-16457497)
chr8 (7-39)||(37986862-37986894)
[»] chr6 (1 HSPs)
chr6 (3-39)||(3117538-3117574)
[»] chr5 (3 HSPs)
chr5 (5-41)||(7162319-7162355)
chr5 (3-39)||(18593288-18593324)
chr5 (3-39)||(34378143-34378179)
[»] chr2 (2 HSPs)
chr2 (3-39)||(39338865-39338901)
chr2 (3-39)||(7874336-7874372)
[»] chr1 (5 HSPs)
chr1 (3-39)||(31585760-31585796)
chr1 (3-39)||(5389421-5389457)
chr1 (3-39)||(30685904-30685940)
chr1 (3-39)||(41920497-41920533)
chr1 (3-39)||(46692819-46692855)
[»] chr4 (2 HSPs)
chr4 (3-32)||(8255079-8255108)
chr4 (3-32)||(8268497-8268526)
[»] scaffold0343 (1 HSPs)
scaffold0343 (3-39)||(5750-5786)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 25333120 - 25333294
Alignment:
Q  42 cttgttgcttctctatacaaacaattttaccattgcaacattatcttaacgaaatcaaatgaagatcaactcttgagggtaaacttcgatccatcaaacc 141  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25333120 cttgttgcttctatatacaaacaattttaccattgcaacattatcttaacgaaatcaaatgaagatcaactcttgagggtaaacttcgatccatcaaacc 25333219  T
Q  142 tcaaccaatttgttacaaacttttgctgattttgtaatacacgattaccttaaaaactttctaatatgtacaatc 216  Q
    ||||| ||| |||||||||  |||| ||||||| || |||| ||| |||||||||||||| ||||||||||||||    
T  25333220 tcaactaatgtgttacaaaactttggtgattttatattacatgatcaccttaaaaactttataatatgtacaatc 25333294  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 252 - 383
Target Start/End: Original strand, 25333365 - 25333496
Alignment:
Q  252 ccatcaaccaaaatcatgtccttttactcatcctaaaaccgaacaaaactgacctccataaataacagtactattaatgtgacatatgaatatcaaagag 351  Q
    |||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||| ||| |||||| |||||||||||||||||    
T  25333365 ccatcaacaaaaatcatgtccttttactcatccaaaaaccaaacaaaaatgacctccataaatatcagtaccatttatgtgagatatgaatatcaaagag 25333464  T
Q  352 tataaaaaccgtagggctcacagaacagaagt 383  Q
    |||||||| | |||  ||||||||||||||||    
T  25333465 tataaaaaacatagatctcacagaacagaagt 25333496  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 17551038 - 17551002
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  17551038 agcccaaaaaccaacttgagtcaaagaactgactccc 17551002  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 19176583 - 19176547
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  19176583 agcccaaaaaccaacttgagtcaaagaactgactccc 19176547  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 20611864 - 20611828
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  20611864 agcccaaaaaccaacttaagtcaaagaactgactccc 20611828  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 43012452 - 43012420
Alignment:
Q  7 caaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||| ||||||    
T  43012452 caaaaaccaacttgagtcaaagaactgactccc 43012420  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 38306342 - 38306304
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactcccaa 41  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  38306342 agcccaaaaaccaacttgagtcaaagaactgactcccaa 38306304  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 3867197 - 3867161
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  3867197 agcccaaaaaccaacttgagtcaaagaactgactccc 3867161  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 3419656 - 3419692
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||||||||||||||||||||| || ||||||    
T  3419656 agcccaaaaaccaacttgagtcaaagagctgactccc 3419692  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 37795070 - 37795034
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  37795070 agcccaaaaaccaacttgactcaaagaactgactccc 37795034  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 47325885 - 47325921
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||||||||||||||||||||| || ||||||    
T  47325885 agcccaaaaaccaacttgagtcaaagagctgactccc 47325921  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 9519580 - 9519544
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9519580 agcccaaaaaccaacttgagtcaaagaactgactccc 9519544  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 24995395 - 24995431
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24995395 agcccaaaaaccaacttgagtcaaagaactgactccc 24995431  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 34389005 - 34389039
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactc 37  Q
    |||||||||||||||||||||||||||||| ||||    
T  34389005 agcccaaaaaccaacttgagtcaaagaactgactc 34389039  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 16457461 - 16457497
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  16457461 agcctaaaaaccaacttgagtcaaagaactgactccc 16457497  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 37986862 - 37986894
Alignment:
Q  7 caaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||| ||||||    
T  37986862 caaaaaccaacttgagtcaaagaactgactccc 37986894  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 3117574 - 3117538
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  3117574 agcccaaaaaccaacttgagtcaaagaactgactccc 3117538  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 7162319 - 7162355
Alignment:
Q  5 cccaaaaaccaacttgagtcaaagaactcactcccaa 41  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7162319 cccaaaaaccaacttgagtcaaagaactgactcccaa 7162355  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 18593324 - 18593288
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  18593324 agcccaaaaaccaacttgagtcaaagaactaactccc 18593288  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 34378179 - 34378143
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  34378179 agcccaaaaaccaacttgtgtcaaagaactgactccc 34378143  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 39338865 - 39338901
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  39338865 agcccaaaaaccaacttgagtcaaagaactgactccc 39338901  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 7874372 - 7874336
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||||||||||||||||||||| || ||||||    
T  7874372 agcccaaaaaccaacttgagtcaaagagctgactccc 7874336  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 31585760 - 31585796
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31585760 agcccaaaaaccaacttgagtcaaagaactgactccc 31585796  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 5389421 - 5389457
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  5389421 agcccaaaaacaaacttgagtcaaagaactgactccc 5389457  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 30685904 - 30685940
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  30685904 agcccaaaagccaacttgagtcaaagaactgactccc 30685940  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 41920533 - 41920497
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  41920533 agcccaaaatccaacttgagtcaaagaactgactccc 41920497  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 46692819 - 46692855
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  46692819 agcccaaaaaccaacttgagccaaagaactaactccc 46692855  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 8255108 - 8255079
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaact 32  Q
    ||||||||||||||||||||||||||||||    
T  8255108 agcccaaaaaccaacttgagtcaaagaact 8255079  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 8268526 - 8268497
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaact 32  Q
    ||||||||||||||||||||||||||||||    
T  8268526 agcccaaaaaccaacttgagtcaaagaact 8268497  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 5786 - 5750
Alignment:
Q  3 agcccaaaaaccaacttgagtcaaagaactcactccc 39  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  5786 agcccaaaaaccaacctgagtcaaagaactgactccc 5750  T

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