View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_high_11 (Length: 314)
Name: NF13393_high_11
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 49433290 - 49433591
Alignment:
| Q |
1 |
ttgttattaaatggtgatgcatctacaatctactttgacgttaatatgagtgtcaaggcatggcagagcattttgaatatgagtcaaatnnnnnnnnn-c |
99 |
Q |
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| T |
49433290 |
ttgttattaaatggtgatgcatctacaatctactttgacgttaatatgagtgtcaaggcatggcagagcattttgaatatgagtcaaataaaaaaaaaac |
49433389 |
T |
|
| Q |
100 |
aataagatgaaaaatataatcagtcaagatgaaagaaacattagtatgactgtcaaggaatggcaaggcaggacattcatgaatagtatatgcagagctc |
199 |
Q |
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| T |
49433390 |
aataagatgaaaaatataatcagtcaagatgaaagaaacattagtatgactgtcaaggaatggcaaggcaagacattcatgaatagtatatgcagagctc |
49433489 |
T |
|
| Q |
200 |
ttgacacagtttatcccaaaatatattcaattaattgcttgactgatcatccgagaaattaccatttcaaaattgaacacaattatttgcatccattcat |
299 |
Q |
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| T |
49433490 |
ttgacacagtttatcccaaaatatattcaatcaattgcttgactgatcatccgagaaattaccatttcaaaattgaacacaattatttgcatccattcat |
49433589 |
T |
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| Q |
300 |
ct |
301 |
Q |
| |
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|| |
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| T |
49433590 |
ct |
49433591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 45 - 297
Target Start/End: Original strand, 22377595 - 22377848
Alignment:
| Q |
45 |
tatgagtgtcaaggcatggcagagcattttgaatatgagtcaaatnnnnnnnnn-caataagatgaaaaatataatcagtcaagatgaaagaaacattag |
143 |
Q |
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| T |
22377595 |
tatgagtgtcaaggcatggcagagcattttgaatatgaatcaaataaaaaaaaaacaataagatgaaaaatataatcagtcaagatgaaagaaacattag |
22377694 |
T |
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| Q |
144 |
tatgactgtcaaggaatggcaaggcaggacattcatgaatagtatatgcagagctcttgacacagtttatcccaaaatatattcaattaattgcttgact |
243 |
Q |
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| T |
22377695 |
tatgactgtgaaggcatggcaaggtaggacattcatgaatagtatatgcagagctcttgacacagtttatcccaaaatatattcaattaattgcttgact |
22377794 |
T |
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| Q |
244 |
gatcatccgagaaattaccatttcaaaattgaacacaattatttgcatccattc |
297 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22377795 |
gatcatccaagaaattaccatttcaaaattgaacacagttatttgcatccattc |
22377848 |
T |
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