View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13393_high_20 (Length: 215)

Name: NF13393_high_20
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13393_high_20
NF13393_high_20
[»] chr2 (2 HSPs)
chr2 (31-201)||(27409378-27409547)
chr2 (132-187)||(40927915-40927970)
[»] chr4 (3 HSPs)
chr4 (31-200)||(31979189-31979357)
chr4 (144-201)||(52628980-52629037)
chr4 (71-119)||(52628880-52628928)
[»] chr6 (1 HSPs)
chr6 (11-119)||(32090578-32090687)
[»] chr3 (1 HSPs)
chr3 (16-104)||(35091903-35091992)
[»] chr5 (1 HSPs)
chr5 (127-190)||(7649827-7649890)
[»] chr1 (2 HSPs)
chr1 (126-187)||(48505870-48505931)
chr1 (142-187)||(48505807-48505852)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 27409547 - 27409378
Alignment:
Q  31 ttggtgaaaccacacacttcatcaaaatcttgaggatatatactaattgaggtgagtttctcatattaggttcttatcatagcaaaaggatatttacatg 130  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27409547 ttggtgaacccacacacttcatcaaaatcttgaggatatatactaattgaggtgagtttctcatattaggttctaatcatagcaaaaggatatttacatg 27409448  T
Q  131 ctatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgttacatatgttgatttt 201  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  27409447 caatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta-atgtgttgatttt 27409378  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 40927915 - 40927970
Alignment:
Q  132 tatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta 187  Q
    |||||||||| |||||||||||||||||||||  |||||||||| |||||||||||    
T  40927915 tatagaatgagaattgaaaccctaattgattttccctttttgtttttgtgttgtta 40927970  T

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Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 31979189 - 31979357
Alignment:
Q  31 ttggtgaaaccacacacttcatcaaaatcttgaggatatatactaattgaggtgagtttctcatattaggttcttatcatagcaaaaggatatttacatg 130  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31979189 ttggtgaacccacacacttcatcaaaatcttgaggatatatactaattgatgtgagtttctcatattaggttctaatcatagcaaaaggatatttacatg 31979288  T
Q  131 ctatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgttacatatgttgattt 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  31979289 caatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta-atgtgttgattt 31979357  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 52628980 - 52629037
Alignment:
Q  144 attgaaaccctaattgatttaacctttttgttgttgtgttgttacatatgttgatttt 201  Q
    ||||||| |||| |||||||  |||||||||| |||||||||||||| ||| ||||||    
T  52628980 attgaaaacctagttgattttccctttttgttattgtgttgttacatgtgtggatttt 52629037  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 52628880 - 52628928
Alignment:
Q  71 tactaattgaggtgagtttctcatattaggttcttatcatagcaaaagg 119  Q
    ||||||||||||||| ||||| | |||||||||| || |||||||||||    
T  52628880 tactaattgaggtgaatttcttaaattaggttctaattatagcaaaagg 52628928  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 32090578 - 32090687
Alignment:
Q  11 gaaggatgatggtttagtgcttggtgaaaccacacacttcatcaaaatcttga-ggatatatactaattgaggtgagtttctcatattaggttcttatca 109  Q
    |||| |||| ||||||| |||||||||| |||||||||||||||||| ||||| ||||  |||||||||||||||| ||||||| |||||||||| || |    
T  32090578 gaagaatgaaggtttagagcttggtgaacccacacacttcatcaaaaccttgacggatcaatactaattgaggtgattttctcaaattaggttctaatta 32090677  T
Q  110 tagcaaaagg 119  Q
    ||||||||||    
T  32090678 tagcaaaagg 32090687  T

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Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 35091992 - 35091903
Alignment:
Q  16 atgatggtttagtgcttggtgaaaccacacacttcatcaaaatcttga-ggatatatactaattgaggtgagtttctcatattaggttct 104  Q
    |||| ||||| | |||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||    
T  35091992 atgaaggtttggagcttggtgaacccacacacttcatcaaaatcttgagggatttctactaattgaggtgagtttctcaaattaggttct 35091903  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 7649890 - 7649827
Alignment:
Q  127 catgctatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgttacat 190  Q
    ||||| |||||||||||||||||||||  ||||||||  |||||||||||||||||| ||||||    
T  7649890 catgcaatagaatgataattgaaaccccgattgatttttcctttttgttgttgtgttcttacat 7649827  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 48505931 - 48505870
Alignment:
Q  126 acatgctatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgttgtta 187  Q
    |||||| ||||||||| |||||||||||||||||||||  || ||||||| |||||||||||    
T  48505931 acatgcaatagaatgagaattgaaaccctaattgattttcccattttgtttttgtgttgtta 48505870  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 48505852 - 48505807
Alignment:
Q  142 taattgaaaccctaattgatttaacctttttgttgttgtgttgtta 187  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||    
T  48505852 taattgaaaccctaattgattttccctttttgtttttgtgttgtta 48505807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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