View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13393_high_7 (Length: 348)

Name: NF13393_high_7
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13393_high_7
NF13393_high_7
[»] chr3 (24 HSPs)
chr3 (18-219)||(40480546-40480747)
chr3 (220-348)||(23467466-23467584)
chr3 (271-348)||(5391495-5391572)
chr3 (271-348)||(21853235-21853312)
chr3 (271-348)||(40845930-40846007)
chr3 (271-348)||(44994981-44995059)
chr3 (271-348)||(8950517-8950594)
chr3 (271-348)||(13856137-13856214)
chr3 (271-348)||(32352885-32352962)
chr3 (271-348)||(3178741-3178818)
chr3 (271-342)||(36539676-36539747)
chr3 (270-342)||(20382563-20382635)
chr3 (272-348)||(46685797-46685873)
chr3 (271-342)||(1781806-1781877)
chr3 (271-342)||(10839393-10839464)
chr3 (270-342)||(19649384-19649456)
chr3 (271-342)||(43347349-43347420)
chr3 (18-72)||(40491407-40491461)
chr3 (288-342)||(47889770-47889824)
chr3 (271-348)||(22845375-22845452)
chr3 (271-348)||(54546942-54547019)
chr3 (292-342)||(791858-791908)
chr3 (167-197)||(34064513-34064543)
chr3 (271-348)||(33103781-33103858)
[»] chr4 (27 HSPs)
chr4 (222-348)||(25954788-25954914)
chr4 (220-348)||(34241031-34241159)
chr4 (271-348)||(1535809-1535886)
chr4 (271-348)||(49284395-49284472)
chr4 (271-348)||(36012198-36012275)
chr4 (271-348)||(46583554-46583631)
chr4 (271-348)||(52632556-52632633)
chr4 (271-343)||(31377433-31377505)
chr4 (271-334)||(11054508-11054571)
chr4 (271-342)||(20818611-20818682)
chr4 (271-348)||(16338226-16338303)
chr4 (271-348)||(35018974-35019050)
chr4 (271-348)||(37801277-37801354)
chr4 (271-342)||(17888563-17888634)
chr4 (271-342)||(50328840-50328911)
chr4 (271-348)||(54090218-54090295)
chr4 (271-342)||(9742546-9742617)
chr4 (270-341)||(12792243-12792314)
chr4 (271-342)||(19124751-19124822)
chr4 (271-334)||(33982056-33982119)
chr4 (271-342)||(47084056-47084127)
chr4 (294-342)||(322585-322633)
chr4 (270-342)||(10094405-10094477)
chr4 (271-309)||(36851400-36851438)
chr4 (222-251)||(31377536-31377565)
chr4 (294-342)||(5780790-5780838)
chr4 (298-342)||(35322744-35322788)
[»] chr6 (13 HSPs)
chr6 (271-348)||(24694664-24694741)
chr6 (271-348)||(1727946-1728023)
chr6 (271-348)||(9231867-9231944)
chr6 (271-348)||(13627578-13627655)
chr6 (271-348)||(14309811-14309888)
chr6 (271-342)||(13103131-13103202)
chr6 (270-348)||(34103723-34103801)
chr6 (271-330)||(24497587-24497646)
chr6 (273-348)||(27863737-27863812)
chr6 (271-334)||(28750663-28750726)
chr6 (294-334)||(8412717-8412757)
chr6 (271-309)||(11084667-11084705)
chr6 (312-348)||(11212709-11212745)
[»] chr7 (15 HSPs)
chr7 (220-348)||(24320401-24320529)
chr7 (271-348)||(10576711-10576788)
chr7 (271-348)||(29981126-29981203)
chr7 (271-348)||(34259556-34259633)
chr7 (271-348)||(34707154-34707231)
chr7 (271-348)||(29555952-29556029)
chr7 (271-348)||(32876543-32876620)
chr7 (271-348)||(44164756-44164833)
chr7 (222-342)||(33057621-33057741)
chr7 (271-348)||(29238156-29238233)
chr7 (222-342)||(17303078-17303198)
chr7 (271-342)||(19334573-19334644)
chr7 (271-334)||(10334230-10334293)
chr7 (271-342)||(15017817-15017888)
chr7 (271-348)||(26284391-26284468)
[»] chr8 (15 HSPs)
chr8 (270-348)||(22324634-22324712)
chr8 (271-348)||(42013910-42013987)
chr8 (271-348)||(21525396-21525473)
chr8 (271-348)||(35806832-35806909)
chr8 (271-348)||(42072466-42072543)
chr8 (271-342)||(26021440-26021511)
chr8 (271-348)||(33934382-33934459)
chr8 (282-348)||(24065311-24065377)
chr8 (270-342)||(21488110-21488182)
chr8 (271-334)||(16523158-16523221)
chr8 (271-342)||(10112091-10112162)
chr8 (220-251)||(42072575-42072606)
chr8 (271-348)||(19334820-19334898)
chr8 (271-332)||(16591388-16591449)
chr8 (271-331)||(16818986-16819046)
[»] chr5 (22 HSPs)
chr5 (271-348)||(23218523-23218600)
chr5 (271-348)||(38397636-38397713)
chr5 (271-348)||(6257423-6257500)
chr5 (271-348)||(37169046-37169123)
chr5 (271-348)||(16618583-16618660)
chr5 (271-348)||(39862500-39862577)
chr5 (271-342)||(10081189-10081260)
chr5 (271-348)||(15631651-15631729)
chr5 (271-348)||(25560340-25560418)
chr5 (271-342)||(8456976-8457047)
chr5 (271-348)||(33271283-33271360)
chr5 (270-342)||(42119666-42119738)
chr5 (271-348)||(36769087-36769164)
chr5 (270-342)||(11856339-11856411)
chr5 (271-342)||(27916184-27916255)
chr5 (271-334)||(29790232-29790295)
chr5 (292-342)||(19322056-19322106)
chr5 (283-342)||(9738008-9738067)
chr5 (271-342)||(614405-614476)
chr5 (271-334)||(10052513-10052576)
chr5 (294-348)||(6174782-6174838)
chr5 (218-251)||(15631761-15631794)
[»] chr2 (17 HSPs)
chr2 (271-348)||(14942057-14942134)
chr2 (271-348)||(42769771-42769848)
chr2 (270-348)||(14186450-14186528)
chr2 (271-348)||(19181586-19181663)
chr2 (271-348)||(29846480-29846557)
chr2 (271-348)||(40277301-40277378)
chr2 (271-342)||(6318471-6318542)
chr2 (282-348)||(1387312-1387378)
chr2 (270-342)||(2888085-2888157)
chr2 (271-342)||(14539717-14539788)
chr2 (271-342)||(43139791-43139862)
chr2 (271-348)||(3956609-3956687)
chr2 (312-348)||(3597921-3597957)
chr2 (271-342)||(41674719-41674790)
chr2 (271-341)||(33009718-33009788)
chr2 (162-219)||(11251086-11251143)
chr2 (294-334)||(25665276-25665316)
[»] chr1 (18 HSPs)
chr1 (271-348)||(7742792-7742869)
chr1 (271-348)||(10156029-10156106)
chr1 (271-348)||(49902506-49902583)
chr1 (271-348)||(3346824-3346901)
chr1 (271-348)||(5975026-5975103)
chr1 (271-348)||(29149561-29149638)
chr1 (271-348)||(47022740-47022817)
chr1 (271-348)||(48392419-48392496)
chr1 (271-348)||(42517307-42517388)
chr1 (271-342)||(38859895-38859966)
chr1 (222-334)||(42456624-42456736)
chr1 (271-348)||(23908323-23908400)
chr1 (294-348)||(5558347-5558401)
chr1 (235-342)||(10907625-10907732)
chr1 (271-329)||(37189697-37189755)
chr1 (270-334)||(13131948-13132012)
chr1 (271-342)||(26835382-26835453)
chr1 (222-251)||(38859998-38860027)
[»] scaffold0079 (1 HSPs)
scaffold0079 (271-348)||(54557-54634)
[»] scaffold0086 (1 HSPs)
scaffold0086 (271-342)||(20844-20915)
[»] scaffold0045 (1 HSPs)
scaffold0045 (271-342)||(34465-34536)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 40480747 - 40480546
Alignment:
Q  18 aagatttgcaatatctctggtcaaaaataaaataaaattggtattattaatcttaccgagagaaataatattgtgtgtatgtataatgtaccaaaggtcg 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  40480747 aagatttgcaatatctctggtcaaaaataaaataaaataggtattattaatcttaccgagagaaataatattgtgtgtatgtataatgtactaaaggccg 40480648  T
Q  118 tggttcatcaaaataaaaataataatgttaaatagtgtctcttaaaacccacttaagttggtttagtggtgttgtcttgagacttagaagtgtgctgctc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  40480647 tggttcatcaaaataaaaataataatgttaaatagtgtctcttaaaacccgcttaagttggtttagtggtgttgtcgtgagacttagaagtgtgcttctc 40480548  T
Q  218 ct 219  Q
    ||    
T  40480547 ct 40480546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 220 - 348
Target Start/End: Original strand, 23467466 - 23467584
Alignment:
Q  220 aggggcggttctatggcccggcgaccccgggctccgggccaannnnnnnctaatttcttgtgtaaatccctataaatttcttatataaacttctataaat 319  Q
    ||||||||||||| |||||||||||||| |||||||||||||          |||| |||||||||||||||| ||||||||||||||||  ||||||||    
T  23467466 aggggcggttctaaggcccggcgacccccggctccgggccaa----------attttttgtgtaaatccctatgaatttcttatataaacccctataaat 23467555  T
Q  320 tgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||||||||||    
T  23467556 tgggcaatttctttacattttttattatt 23467584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 5391572 - 5391495
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  5391572 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 5391495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 21853312 - 21853235
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  21853312 aatttcttgtgtaaatccctatgaatttcttatataaaaccctataaattgggcaatttctttacattttttattatt 21853235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 40845930 - 40846007
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  40845930 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 40846007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 44994981 - 44995059
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttct-ataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  44994981 aatttcttgtgtaaatccctatgaatttcttatataaaccccttataaattgggcaatttctttacattttttattatt 44995059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 8950517 - 8950594
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||| ||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  8950517 aatttcttgtgtaaattcctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 8950594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 13856214 - 13856137
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| |||||||||||||||   ||||||||||| |||||||||||||||||||||||||    
T  13856214 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattggacaatttctttacattttttattatt 13856137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 32352962 - 32352885
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||| ||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  32352962 aatttcttgtataaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatt 32352885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 3178818 - 3178741
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||  |||||| |||||    
T  3178818 aatttcttgtgtaaatccctatgaatttcttatataaatctctataaattgggcaatttctttagttttttttttatt 3178741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 36539747 - 36539676
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||||    
T  36539747 aatttcttatgtaaatccctataaatttcttatataatcccctataaattgggcaatttctttaaatttttt 36539676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 20382635 - 20382563
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||| ||||||||||||| ||||||||||||||||  |||||||||||| |||||||||| |||||||    
T  20382635 taatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggaaatttctttagatttttt 20382563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 46685797 - 46685873
Alignment:
Q  272 atttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||||||||| | ||||||||||| |||||||||||||    
T  46685797 atttcttatgtaaatccccctaaatttcttatataaactcctataaatttgacaatttctttatattttttattatt 46685873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 1781877 - 1781806
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||||||| | ||||||||||||||||  | ||||||||||||||||||||| |||||||    
T  1781877 aatttcttatgtaaatccctctgaatttcttatataaaccccaataaattgggcaatttctttagatttttt 1781806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 10839393 - 10839464
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| |||||||  || | |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10839393 aatttcttatgtaaatttctctgaatttcttatataaacctctataaattgggcaatttctttagatttttt 10839464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 19649384 - 19649456
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||| |||||||| |||| ||||||||||||||||   |||||||||| ||||||||||| |||||||    
T  19649384 taatttcttatgtaaatcgctatgaatttcttatataaacccttataaattggacaatttctttagatttttt 19649456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 43347349 - 43347420
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||| | ||||||||||||||||  ||| ||||||||||||||||||| |||||||    
T  43347349 aatttcttatgtaaattcctctgaatttcttatataaacccctacaaattgggcaatttctttagatttttt 43347420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 40491461 - 40491407
Alignment:
Q  18 aagatttgcaatatctctggtcaaaaataaaataaaattggtattattaatctta 72  Q
    |||||| ||||||||||| |||||||||||||||||||||||| ||||| |||||    
T  40491461 aagattggcaatatctctagtcaaaaataaaataaaattggtactattagtctta 40491407  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 47889824 - 47889770
Alignment:
Q  288 cctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||    
T  47889824 cctatgaatttcttatataaattcctataaattgggcaatttctttaaatttttt 47889770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 22845375 - 22845452
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||| ||||||| |   ||||||||||||||||||  ||||||||| | ||||||||||| |||||||||||||    
T  22845375 aatttcttatgtaaattcacctaaatttcttatataaacccctataaatttgacaatttctttagattttttattatt 22845452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 54547019 - 54546942
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||  |||||| ||| | ||||||||||||||||  ||||||||||| ||||||||||| |||||| ||||||    
T  54547019 aatttcttacgtaaattcctttgaatttcttatataaacccctataaattggacaatttctttagatttttgattatt 54546942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 791908 - 791858
Alignment:
Q  292 taaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||||||||||| | |||||||||| | |||||||||| |||||||    
T  791908 taaatttcttatataaattcctataaattgcgtaatttctttatatttttt 791858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 34064543 - 34064513
Alignment:
Q  167 cacttaagttggtttagtggtgttgtcttga 197  Q
    |||||||||||||||||||||||||||||||    
T  34064543 cacttaagttggtttagtggtgttgtcttga 34064513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 33103858 - 33103781
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||| ||||||| ||  ||||||||||||||||    |||||||||||  ||||| |||| |||||||||||||    
T  33103858 aatttcttatgtaaattcccttaaatttcttatataagtccctataaattggataatttatttaaattttttattatt 33103781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 222 - 348
Target Start/End: Complemental strand, 25954914 - 25954788
Alignment:
Q  222 gggcggttctatggcccggcgaccccgggctccgggccaannnnnnnctaatttcttgtgtaaatccctataaatttcttatataaacttctataaattg 321  Q
    ||||||||||| ||||||||||||||||||||||||||||         |||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  25954914 gggcggttctaaggcccggcgaccccgggctccgggccaaattttttgcaatttcttgtgtaaattcctatgaatttcttatataaactcctataaattg 25954815  T
Q  322 ggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||||||||    
T  25954814 ggcaatttctttacattttttattatt 25954788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 220 - 348
Target Start/End: Complemental strand, 34241159 - 34241031
Alignment:
Q  220 aggggcggttctatggcccggcgaccccgggctccgggccaannnnnnnctaatttcttgtgtaaatccctataaatttcttatataaacttctataaat 319  Q
    ||||||||||||| ||||||||||||||||||||||||||||         ||||||||||||| |||||||| ||||||||||||||||  ||||||||    
T  34241159 aggggcggttctaaggcccggcgaccccgggctccgggccaaattttttgcaatttcttgtgtagatccctatgaatttcttatataaacccctataaat 34241060  T
Q  320 tgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||||||||||    
T  34241059 tgggcaatttctttacattttttattatt 34241031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 1535886 - 1535809
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  1535886 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 1535809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 49284472 - 49284395
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  49284472 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 49284395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 36012198 - 36012275
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  36012198 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 36012275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 46583554 - 46583631
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  46583554 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattaggcaatttctttacattttttattatt 46583631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 52632633 - 52632556
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||| ||||    
T  52632633 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttaatatt 52632556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 31377505 - 31377433
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttta 343  Q
    |||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||    
T  31377505 aatttcttatgtaaatccctatgaatttcttatataaccctctataaattgggcaatttctttagatttttta 31377433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 11054571 - 11054508
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  11054571 aatttcttatgtaaatccctatgaatttcttatataaacctctataaattgggcaatctcttta 11054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 20818682 - 20818611
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||| |||||||    
T  20818682 aatttcttttgtaaatccctatgaatttcttatataaactcctataaattggtcaatttttttagatttttt 20818611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 16338226 - 16338303
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||| ||||| ||||| |||||||||   ||||||||||| |||||||||||||||||||||||||    
T  16338226 aattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatt 16338303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 35019050 - 35018974
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||| ||| ||||||||||||||||   |||||||| || ||||||||||||||||||||||||    
T  35019050 aatttcttgtgtaaatcc-tatgaatttcttatataaacccttataaattaggtaatttctttacattttttattatt 35018974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 37801277 - 37801354
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||  |||| ||||| |||||||||   ||||||||||||||| |||||||||||||||||||||    
T  37801277 aatttcttgtgtaaatttctatgaattttttatataaatccctataaattgggcaaattctttacattttttattatt 37801354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 17888563 - 17888634
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||||| |||||||||||||| |  ||||||||||||||||||||||| |||||||    
T  17888563 aatttcttatgtaaattcctatgaatttcttatataaccccctataaattgggcaatttctttagatttttt 17888634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 50328911 - 50328840
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||| | |||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  50328911 aatttcttttgtaaattcctcttaatttcttatataaacctctataaattggacaatttctttaaatttttt 50328840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 54090295 - 54090218
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||| ||| ||||||||||| | ||||| |||||||||||  ||||||||||||||||| |||| |||||||||||||    
T  54090295 aattccttttgtaaatccctctgaatttattatataaactcttataaattgggcaatttttttagattttttattatt 54090218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 9742546 - 9742617
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||| | |||||||||||| |||  ||||||||||||||||||||||| |||||||    
T  9742546 aatttcttatgtaaattcctctgaatttcttatattaacccctataaattgggcaatttctttagatttttt 9742617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 341
Target Start/End: Original strand, 12792243 - 12792314
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttt 341  Q
    ||||||||| |||||||  || | ||||||||||||||||  ||||||||||||||||| ||||| ||||||    
T  12792243 taatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggcaattactttagattttt 12792314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 19124751 - 19124822
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||| | |||||||||||||||| ||| |||||||  ||||||||||| |||||||    
T  19124751 aatttcttatgtaaattcctctgaatttcttatataaacatctgtaaattgatcaatttctttaaatttttt 19124822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 33982119 - 33982056
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||||| ||||||||||| |||||||||||||||||||  |||||||| |  ||||||||||    
T  33982119 aatttcttttgtaaatccctctaaatttcttatataaactcttataaattagataatttcttta 33982056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 47084127 - 47084056
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| |||||||  || | ||||||||||||||||  |||||||||||| |||||||||| |||||||    
T  47084127 aatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttctttagatttttt 47084056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 322585 - 322633
Alignment:
Q  294 aatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||||||||||  ||||||||||| ||||||||||| |||||||    
T  322585 aatttcttatataaacccctataaattggacaatttctttaaatttttt 322633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 10094405 - 10094477
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||| |||||||  || | ||||||||||||||||  |||||||||||| ||||| |||| |||||||    
T  10094405 taatttcttatgtaaatttctctgaatttcttatataaacccctataaattgggtaatttatttagatttttt 10094477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Original strand, 36851400 - 36851438
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaac 309  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  36851400 aatttcttgtgtaaatccctatgaatttattatataaac 36851438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 31377565 - 31377536
Alignment:
Q  222 gggcggttctatggcccggcgaccccgggc 251  Q
    ||||||||||||||||||||||||||||||    
T  31377565 gggcggttctatggcccggcgaccccgggc 31377536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 5780790 - 5780838
Alignment:
Q  294 aatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||||||||||    |||||||||||||||||||||| |||||||    
T  5780790 aatttcttatataaatccttataaattgggcaatttctttaaatttttt 5780838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 35322744 - 35322788
Alignment:
Q  298 tcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||||||| |||||||||||  ||||||||||| |||||||    
T  35322744 tcttatataaacctctataaattgaacaatttctttagatttttt 35322788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 24694664 - 24694741
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24694664 aatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttacattttttattatt 24694741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 1727946 - 1728023
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  1727946 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttttattatt 1728023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 9231867 - 9231944
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||| |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  9231867 aatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 9231944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 13627655 - 13627578
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  13627655 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgagcaatttctttacattttttattatt 13627578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 14309811 - 14309888
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  14309811 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 14309888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 13103131 - 13103202
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||| || ||||||| ||| | |||||||||||||||| | |||||||||||||||||||||| |||||||    
T  13103131 aattttttatgtaaattcctctgaatttcttatataaacctttataaattgggcaatttctttagatttttt 13103202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 34103801 - 34103723
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||| || ||||||| ||| | ||||||||||||||||   ||||||||||| |||||||||| |||||||||||||    
T  34103801 taatttattatgtaaattcctctgaatttcttatataaacccgtataaattgggaaatttctttagattttttattatt 34103723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 24497587 - 24497646
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttc 330  Q
    ||||| |||||||||| ||| | ||||||||||||||||  |||||||||||||||||||    
T  24497587 aattttttgtgtaaattcctctgaatttcttatataaacccctataaattgggcaatttc 24497646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 27863812 - 27863737
Alignment:
Q  273 tttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||| |||||||  || | ||||||||||||||||   |||||||||| ||||||||||| |||||||||||||    
T  27863812 tttcttatgtaaatttctctgaatttcttatataaacccttataaattggacaatttctttagattttttattatt 27863737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 28750663 - 28750726
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||||| ||||||| | | | ||||||||||||||||  |||||||||||||||||||||||    
T  28750663 aatttcttatgtaaattcttctgaatttcttatataaacccctataaattgggcaatttcttta 28750726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 8412717 - 8412757
Alignment:
Q  294 aatttcttatataaacttctataaattgggcaatttcttta 334  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  8412717 aatttcttatataaacgcctataaattgggcaatttcttta 8412757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 11084705 - 11084667
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaac 309  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  11084705 aatttcttgtgtaaattcctatgaatttcttatataaac 11084667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 11212745 - 11212709
Alignment:
Q  312 ctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  11212745 ctataaattgggcaatttctttagatttttaattatt 11212709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 348
Target Start/End: Original strand, 24320401 - 24320529
Alignment:
Q  220 aggggcggttctatggcccggcgaccccgggctccgggccaannnnnnnctaatttcttgtgtaaatccctataaatttcttatataaacttctataaat 319  Q
    ||||||||||||| |||||| ||| |||||||||||||||||         |||||||||||||||| ||||  ||||||||||||||||  ||||||||    
T  24320401 aggggcggttctaaggcccgacgaacccgggctccgggccaaattttttgcaatttcttgtgtaaattcctacgaatttcttatataaacccctataaat 24320500  T
Q  320 tgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||||||||||    
T  24320501 tgggcaatttctttacattttttattatt 24320529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 10576788 - 10576711
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  10576788 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 10576711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 29981126 - 29981203
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  29981126 aatttcttgtgtaaatccctatgaatttcttatataaacttctataaattggacaatttctttatattttttattatt 29981203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 34259633 - 34259556
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34259633 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 34259556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 34707231 - 34707154
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34707231 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 34707154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 29555952 - 29556029
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||| ||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  29555952 aatttcttgtgtaaattcctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 29556029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 32876543 - 32876620
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||| |||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  32876543 aatttcttgtgtagatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 32876620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 44164756 - 44164833
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||  |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  44164756 aatttcttgtgtaaatttctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 44164833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 33057621 - 33057741
Alignment:
Q  222 gggcggttctatggcccggcgaccccgggctccgggccaannnnnnnctaatttcttgtgtaaatccctataaatttcttatataaacttctataaattg 321  Q
    ||||||||||||||||||||||||||||||||||| ||||         |||||||| ||||||||||||| |||||||||||||| |  ||||||||||    
T  33057621 gggcggttctatggcccggcgaccccgggctccggcccaattttttttcaatttcttatgtaaatccctatgaatttcttatataatcccctataaattg 33057720  T
Q  322 ggcaatttctttacatttttt 342  Q
      ||||||||||| |||||||    
T  33057721 aacaatttctttagatttttt 33057741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 29238156 - 29238233
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  ||| |||||||  ||||||||||||||||||||||||    
T  29238156 aatttcttgtgtaaatccctatgaatttcttatataaacccctaaaaattggaaaatttctttacattttttattatt 29238233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 342
Target Start/End: Original strand, 17303078 - 17303198
Alignment:
Q  222 gggcggttctatggcccggcgaccccgggctccgggccaannnnnnnctaatttcttgtgtaaatccctataaatttcttatataaacttctataaattg 321  Q
    |||| ||||||||||| |||||||||||||||||  ||||         |||||||| ||||||| ||||| ||||||||||||||||   | |||||||    
T  17303078 gggcagttctatggcctggcgaccccgggctccgacccaatttttttgcaatttcttatgtaaattcctatgaatttcttatataaacccttgtaaattg 17303177  T
Q  322 ggcaatttctttacatttttt 342  Q
    ||||||||||||| |||||||    
T  17303178 ggcaatttctttagatttttt 17303198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 19334573 - 19334644
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||||| ||||||||||||||||  ||||||||||| ||||||||||| |||||||    
T  19334573 aatttcttatgtaaatacctatgaatttcttatataaacccctataaattggacaatttctttagatttttt 19334644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 10334293 - 10334230
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||||| ||||||| ||| | |||||||||||||||||  ||||||||||||||||||||||    
T  10334293 aatttcttatgtaaattcctctgaatttcttatataaactcttataaattgggcaatttcttta 10334230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 15017888 - 15017817
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||| | ||||||||||||||||   |||||||||| ||||||||||| |||||||    
T  15017888 aatttcttatgtaaattcctctgaatttcttatataaacgcgtataaattggacaatttctttagatttttt 15017817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 26284391 - 26284468
Alignment:
Q  271 aatttcttgtgtaaa-tccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||| |||||| ||||| | ||||||||||| |||||  |||||||||| ||||||||||| |||||||||||||    
T  26284391 aatttcttatgtaaaatccctctgaatttcttata-aaactagtataaattggacaatttctttagattttttattatt 26284468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 22324712 - 22324634
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  22324712 taatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 22324634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 42013987 - 42013910
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  42013987 aatttcttgtgtaaatccctatgaatttcttatataaactcctataaattgggcaatttctttatattttttattatt 42013910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 21525473 - 21525396
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  21525473 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 21525396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 35806909 - 35806832
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||| |||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  35806909 aatttcttgtgtaaatctctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 35806832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 42072543 - 42072466
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  42072543 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 42072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 26021511 - 26021440
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||||||||| ||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  26021511 aatttcttttgtaaatccctatgaatttcttatataaacccctataaattgggtaatttctttacatttttt 26021440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 33934382 - 33934459
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||| ||||||| ||||| ||||||||||||||||  |||||||||||||||||| |||| |||||||||||||    
T  33934382 aatttcttttgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttatattttttattatt 33934459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 24065377 - 24065311
Alignment:
Q  282 taaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||| |||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  24065377 taaatctctatgaatttcttatataaactcctataaattgggcaatttctttagcttttttattatt 24065311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 21488182 - 21488110
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||||||||||| ||| | ||||||||||| ||||  | ||||||||| ||||||||||| |||||||    
T  21488182 taatttcttgtgtaaattcctttgaatttcttatagaaaccccgataaattggacaatttctttagatttttt 21488110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 16523221 - 16523158
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||| | ||||||||||||| |||||||||||||||   ||||||||||||||| |||||||    
T  16523221 aatttcatatgtaaatccctatgaatttcttatataaatccctataaattgggcaacttcttta 16523158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 10112162 - 10112091
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||| || ||||||| ||| | |||||||||||||||||  |||||||||| ||||||||||  |||||||    
T  10112162 aattttttatgtaaattcctcttaatttcttatataaactcttataaattggacaatttcttttaatttttt 10112091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 251
Target Start/End: Complemental strand, 42072606 - 42072575
Alignment:
Q  220 aggggcggttctatggcccggcgaccccgggc 251  Q
    ||||||||||||||||||||||||||||||||    
T  42072606 aggggcggttctatggcccggcgaccccgggc 42072575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 19334898 - 19334820
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatt-ttttattatt 348  Q
    |||||||| | ||||| | ||| ||||| |||||||||| |||||||||| | ||||||||||| ||| ||||||||||    
T  19334898 aatttcttatataaattcttatgaattttttatataaacctctataaattagacaatttctttaaattgttttattatt 19334820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 16591388 - 16591449
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctt 332  Q
    |||||||| |||||||  |||  |||||||||||||||   |||||||||||||||||||||    
T  16591388 aatttcttatgtaaatttctaagaatttcttatataaatcactataaattgggcaatttctt 16591449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 16818986 - 16819046
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttct 331  Q
    |||||||| |||||||| |  | ||||||||||||||||  |||||||||||| |||||||    
T  16818986 aatttcttttgtaaatctccttgaatttcttatataaacccctataaattgggtaatttct 16819046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 23218600 - 23218523
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  23218600 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 23218523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 38397713 - 38397636
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  38397713 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 38397636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 6257423 - 6257500
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||    
T  6257423 aatttcttgtgtaaatccctatgaatttcttatacaaacccctataaattgggcaatttctttacattttttattatt 6257500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 37169046 - 37169123
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  37169046 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 37169123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 16618583 - 16618660
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||    
T  16618583 aatttcttgtgtaaatccctatgaatttcttatataaactcctataaattggacaatttttttatattttttattatt 16618660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 39862500 - 39862577
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  39862500 aatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttagattttttattatt 39862577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 10081260 - 10081189
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  10081260 aatttcttatgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttagatttttt 10081189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 15631729 - 15631651
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttc-tataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||| ||||||||||| ||||||||||||||||  | |||||||||| |||||||||||||||||||||||||    
T  15631729 aatttcttgtataaatccctatgaatttcttatataaaccccctataaattggacaatttctttacattttttattatt 15631651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 25560340 - 25560418
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatt-ttttattatt 348  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||    
T  25560340 aatttcttatgtaaatccttataaatttcttatataaacatctataaattggacaatttctttagattattttattatt 25560418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 8456976 - 8457047
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||||||||| |||||||||||||| |  ||||||||||||||||||||||| |||||||    
T  8456976 aatttcttatgtaaatccctatgaatttcttatataaccccctataaattgggcaatttctttagatttttt 8457047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 33271283 - 33271360
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||| ||||||| ||  | |||||||||||||||| |||||||||||| ||||||||||| |||||||||||||    
T  33271283 aatttcttatgtaaattccgttgaatttcttatataaacctctataaattggacaatttctttatattttttattatt 33271360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 42119738 - 42119666
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||| ||||||| ||| | |||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  42119738 taatttcttatgtaaattcctctgaatttcttatataaacctctataaattggacaatttctttagatttttt 42119666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 36769087 - 36769164
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||| ||||||| ||| | |||||||||||||||| ||||| |||| ||||||||||||| |||||| ||||||    
T  36769087 aatttcttatgtaaattcctctgaatttcttatataaacctctatgaattaggcaatttctttagatttttgattatt 36769164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 11856411 - 11856339
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||| |||||||| || | |||||||||||||||   ||||||||||||||||||||||| |||||||    
T  11856411 taatttcttatgtaaatcgctctgaatttcttatataaatcactataaattgggcaatttctttagatttttt 11856339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 27916255 - 27916184
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||| | ||||||||||||||||| |||||||||| |||||||| ||| |||||||    
T  27916255 aatttcttatgtaaattcctctgaatttcttatataaactcctataaattgagcaatttcattagatttttt 27916184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 29790232 - 29790295
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||||| ||||||| | ||| |||||||||||||||| | ||||||||||||||||||||||    
T  29790232 aatttcttatgtaaattcttatgaatttcttatataaacctttataaattgggcaatttcttta 29790295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 19322056 - 19322106
Alignment:
Q  292 taaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  19322056 taaatttcttatataaactcctataaattgggcaattactttagatttttt 19322106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 9738008 - 9738067
Alignment:
Q  283 aaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||||| |||||||||||||||   ||||||||||| ||||||||||| |||||||    
T  9738008 aaatccctatgaatttcttatataaatccctataaattggacaatttctttagatttttt 9738067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 614405 - 614476
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||| | ||||| |||||||||   ||||||||| ||||||||||||| |||||||    
T  614405 aatttcttatgtaaattcctctgaattttttatataaatccctataaatttggcaatttctttagatttttt 614476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 10052513 - 10052576
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||||| ||||||||||| | || | ||||||||||| |||||||||| || ||||||||||    
T  10052513 aatttcttatgtaaatccctctgaactacttatataaacgtctataaattaggtaatttcttta 10052576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 6174838 - 6174782
Alignment:
Q  294 aatttcttatataaacttc--tataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||  |  |||||||||| ||||||||||| |||||||||||||    
T  6174838 aatttcttatataaacccccctataaattggacaatttctttatattttttattatt 6174782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Complemental strand, 15631794 - 15631761
Alignment:
Q  218 ctaggggcggttctatggcccggcgaccccgggc 251  Q
    ||||||||||||||| ||||||||||||||||||    
T  15631794 ctaggggcggttctaaggcccggcgaccccgggc 15631761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 14942057 - 14942134
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  14942057 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 14942134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 42769771 - 42769848
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  42769771 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 42769848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 14186450 - 14186528
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  14186450 taatttcttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacactttttattatt 14186528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 19181663 - 19181586
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  19181663 aatttcttgtgtaaattcctatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 19181586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 29846557 - 29846480
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  29846557 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 29846480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 40277301 - 40277378
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| || |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  40277301 aattttttatgtaaatccctataaatttcttatataaatccctataaattgggcaatttctttacattttttattatt 40277378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 6318471 - 6318542
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||||||||| |||||||||||||||   ||||||||||||||||||||||| |||||||    
T  6318471 aatttcttatgtaaatccctatgaatttcttatataaatccctataaattgggcaatttctttagatttttt 6318542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 1387312 - 1387378
Alignment:
Q  282 taaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||| ||||||||| ||||||  |||||||||||| |||||||||| |||||||||||||    
T  1387312 taaatccctatgaatttcttagataaacccctataaattgggtaatttctttagattttttattatt 1387378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 2888157 - 2888085
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||||||| |||||||| |||| ||||| ||||||||||| ||||||||||  |||||| |||| |||||||    
T  2888157 taatttcttatgtaaatctctatgaattttttatataaactcctataaattgaacaatttttttagatttttt 2888085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 14539717 - 14539788
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||| | ||| | ||||||||||||||| | ||||||||| ||||||||||||| |||||||    
T  14539717 aatttcttatgtaatttcctctgaatttcttatataaattcctataaattaggcaatttctttagatttttt 14539788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 43139862 - 43139791
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||| | ||| | ||||||||||||||||  |||||||||| |||||||||||| |||||||    
T  43139862 aatttcttatgtaagttcctcttaatttcttatataaacccctataaattgagcaatttctttagatttttt 43139791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 3956687 - 3956609
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttt-acattttttattatt 348  Q
    ||||| || ||||||||||||| ||||| ||||||||||  || |||||||| |||||||||| | |||||||||||||    
T  3956687 aattttttatgtaaatccctatgaatttattatataaacccctgtaaattggacaatttctttaaaattttttattatt 3956609  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 3597921 - 3597957
Alignment:
Q  312 ctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||| |||||||||||||||||||||||||    
T  3597921 ctataaattggacaatttctttacattttttattatt 3597957  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 41674719 - 41674790
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| |||||||| || | ||||| ||||||||||   |||||||||| ||||||||||| |||||||    
T  41674719 aatttcttatgtaaatctctctgaattttttatataaacccttataaattggacaatttctttagatttttt 41674790  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 33009788 - 33009718
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttt 341  Q
    |||||||| | ||||||||||| ||||| |||||||||    |||||||||| ||||||||||| ||||||    
T  33009788 aatttcttatataaatccctatgaatttgttatataaatccttataaattggacaatttctttagattttt 33009718  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 11251086 - 11251143
Alignment:
Q  162 aaacccacttaagttggtttagtggtgttgtcttgagacttagaagtgtgctgctcct 219  Q
    ||||||||||| ||||| |||||||| ||| |||| ||||| |||||||||| |||||    
T  11251086 aaacccacttaggttggcttagtggtattggcttgggacttggaagtgtgctcctcct 11251143  T

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Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 25665316 - 25665276
Alignment:
Q  294 aatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||||||||||||| | ||||||||||| ||||||||||    
T  25665316 aatttcttatataaacatttataaattgggtaatttcttta 25665276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 7742792 - 7742869
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  7742792 aatttcttgtgtaaatccttatgaatttcttatataaacccctataaattgggcaatttctttacattttttattatt 7742869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 10156029 - 10156106
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  10156029 aatttcttgtgtaaattcctatgaatttcttatataaacttctataaattggacaatttctttatattttttattatt 10156106  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 49902583 - 49902506
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  49902583 aatttcttgtgtaaatccctatgaatttcttatataaacccctataaatagggcaatttctttacattttttattatt 49902506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 3346901 - 3346824
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  3346901 aatttgttgtgtaaatccctatgaatttcttatataaacccctataaattggacaatttctttacattttttattatt 3346824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 5975103 - 5975026
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||  ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  5975103 aatttcttgtgtaaatccctaagaatttcttatataaacccctataaattaggcaatttctttacattttttattatt 5975026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 29149561 - 29149638
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  29149561 aattttttgtgtaaatccctatgaatttcttatataaacccctataaattgggcaatttctttacgttttttattatt 29149638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 47022817 - 47022740
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||    
T  47022817 aatttcttgtgtaaatctctatgaatttcttatataaactcctataaattaggcaatttctttatattttttattatt 47022740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 48392419 - 48392496
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||| |||||||||||||||||    
T  48392419 aatttcttgtgtaaatccctatgaatttcttatataaatccctataaattgggcaatttcattacattttttattatt 48392496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 271 - 348
Target Start/End: Original strand, 42517307 - 42517388
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaactt----ctataaattgggcaatttctttacattttttattatt 348  Q
    |||||||||||||||||||||| ||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  42517307 aatttcttgtgtaaatccctatgaatttcttatataaacaaacccctataaattgggcaatttctttacattttttattatt 42517388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 38859966 - 38859895
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||||| ||||||||||||||||  |||||||||||||||||| |||| |||||||    
T  38859966 aatttcttatgtaaattcctatgaatttcttatataaacccctataaattgggcaatttttttagatttttt 38859895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 334
Target Start/End: Complemental strand, 42456736 - 42456624
Alignment:
Q  222 gggcggttctatggcccggcgaccccgggctccgggccaannnnnnnctaatttcttgtgtaaatccctataaatttcttatataaacttctataaattg 321  Q
    |||||||||||||||||||||||| ||||| || | ||||          ||||||| ||||||| ||||| ||||||||||||||||  ||||||||||    
T  42456736 gggcggttctatggcccggcgacctcgggcacctgcccaaattttttgctatttcttatgtaaattcctatgaatttcttatataaacccctataaattg 42456637  T
Q  322 ggcaatttcttta 334  Q
    |||||||||||||    
T  42456636 ggcaatttcttta 42456624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 23908400 - 23908323
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||| ||||| |||||||||||||||   ||||||||||| |||||||||||  ||||||||||||    
T  23908400 aattttttgtgtaaattcctatgaatttcttatataaatccctataaattggacaatttctttatgttttttattatt 23908323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 5558401 - 5558347
Alignment:
Q  294 aatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||||||||||||||  ||||||||||| ||||||||||| |||||| ||||||    
T  5558401 aatttcttatataaacccctataaattggacaatttctttagatttttgattatt 5558347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 342
Target Start/End: Original strand, 10907625 - 10907732
Alignment:
Q  235 gcccggcgaccccgggctccgggccaannnnnnnctaatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    |||||||||||||||||||||| ||||         |||||||| ||||||| ||| | ||||||||||||||||  ||||||||  | |||||||||||    
T  10907625 gcccggcgaccccgggctccggcccaaattttttgcaatttcttatgtaaattcctctgaatttcttatataaacccctataaatcagacaatttcttta 10907724  T
Q  335 catttttt 342  Q
     |||||||    
T  10907725 gatttttt 10907732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 37189755 - 37189697
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaattt 329  Q
    |||||||| |||||||| |||| |||||||||||||||  |||||||||||| ||||||    
T  37189755 aatttcttatgtaaatctctatgaatttcttatataaatctctataaattggacaattt 37189697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 13132012 - 13131948
Alignment:
Q  270 taatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttcttta 334  Q
    ||||||||| ||||||| ||| ||||||| |||||||||   ||||||||||| |||||||||||    
T  13132012 taatttcttatgtaaattcctctaaattttttatataaatcactataaattggacaatttcttta 13131948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 26835453 - 26835382
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    ||||| || ||||||| | ||| ||||||||||||||||| ||||||||||  |||||| |||| |||||||    
T  26835453 aatttattatgtaaattcatatgaatttcttatataaactcctataaattgaacaatttttttagatttttt 26835382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 38860027 - 38859998
Alignment:
Q  222 gggcggttctatggcccggcgaccccgggc 251  Q
    ||||||||||||||||||||||||||||||    
T  38860027 gggcggttctatggcccggcgaccccgggc 38859998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 54634 - 54557
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacattttttattatt 348  Q
    ||||| |||||||||| ||||| ||||| |||||||||   ||||||||||| |||||||||||||||||||||||||    
T  54634 aattttttgtgtaaattcctatgaattttttatataaatccctataaattggacaatttctttacattttttattatt 54557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 20844 - 20915
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||| ||| | |||||||||||||||  |||||||||||| |||||| |||| |||||||    
T  20844 aatttcttatgtaaattcctctgaatttcttatataaagctctataaattggacaatttttttagatttttt 20915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 34465 - 34536
Alignment:
Q  271 aatttcttgtgtaaatccctataaatttcttatataaacttctataaattgggcaatttctttacatttttt 342  Q
    |||||||| ||||||||||| | ||||  |||||||||  |||||||||||| || |||||||| |||||||    
T  34465 aatttcttatgtaaatccctctgaattctttatataaatctctataaattggacagtttctttagatttttt 34536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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