View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_1 (Length: 521)
Name: NF13393_low_1
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 18 - 514
Target Start/End: Original strand, 33221203 - 33221701
Alignment:
| Q |
18 |
acctaaaagtccctttgtatgtatttgtagtaaattttgtctttccctattccaaatcacttagtatagttttaattaggggtttatttgnnnnnnnngc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33221203 |
acctaaaagtccctttgtatgtatttgtagtaaattttatctttccctattccaaatcacttagtatagttttaattaggggtttatttgaaaaagaagc |
33221302 |
T |
|
| Q |
118 |
aataaacgtatctagttaatttgaaaataagcttatatttatgaataaatttttagtcaaataagctggtatttggaagcccacattttgtgttcactgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33221303 |
aataaacgtatctagttaatttgaaaataagcttatatttatgaacaaatttttagtcaaataagctggtatttggaagcccacattttgtgttcactgt |
33221402 |
T |
|
| Q |
218 |
acctggaaactctcatcgattatcttggttttgcattcttgtgttcacatgcaaaatctac--agactgtaaataaacagatgaagggaagcgttattct |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33221403 |
acctggaaactctcatcgattatcttggttttgcattcttgtgttcacatgcaaaatctacagagactgtaaataaacagatgaagggaagcgttattct |
33221502 |
T |
|
| Q |
316 |
tctgcaannnnnnnncattaatagctaaatgagagtggaaacttaataatgttgaacctataactagttgcatgcatgcatatgggatgtataaattttc |
415 |
Q |
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|| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33221503 |
tccgcaattttttttcattaatagctaaatgagagtggaaactgaataatgttgaacctataactagttgcatgcatgcatatgggatgtataaattttc |
33221602 |
T |
|
| Q |
416 |
atagnnnnnnntatgtacatatagtaagagatgaagaaggatttgccttgtaattttgcaacttaaaagagaaaataagtgttattcttctgcaatttt |
514 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33221603 |
atagaaaaaaatatgtacatatagtaagagatgaagaaggatttgccttgtaattttgcaacttaaaagaaaaaataagtgttattcttctgcaatttt |
33221701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 510
Target Start/End: Original strand, 33229619 - 33229690
Alignment:
| Q |
438 |
agtaagagatgaagaaggatttgccttgtaattttgcaacttaaaagagaaaataagtgttattcttctgcaa |
510 |
Q |
| |
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||||||||||||||||| ||| |||||||||||| | || ||||||||| |||||||||||||||| |||| |
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| T |
33229619 |
agtaagagatgaagaagaatt-gccttgtaatttcctacctcaaaagagaagataagtgttattcttcagcaa |
33229690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 12503542 - 12503498
Alignment:
| Q |
134 |
taatttgaaaataagcttatatttatgaataaatttttagtcaaa |
178 |
Q |
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||||||||||| ||| |||||||||| || ||||||||||||||| |
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| T |
12503542 |
taatttgaaaagaagtttatatttataaacaaatttttagtcaaa |
12503498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 46688509 - 46688358
Alignment:
| Q |
28 |
ccctttgtatgtatttgtagtaaattttgtctttccctattccaaatcacttagtatagttttaattaggggtttatttgnnnnnnnngcaataaacgta |
127 |
Q |
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|||| ||||| ||| |||||||||||||| |||| | |||||||| ||||||| | || ||||||||||||||||||| ||||| || ||| |
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| T |
46688509 |
ccctctgtatatatgtgtagtaaattttgacttttcatattccaaggcacttag--tggtattaattaggggtttatttggaaaagaagcaatgaatgta |
46688412 |
T |
|
| Q |
128 |
tctagttaatttgaaaataagcttatatttatgaataaatttttagtcaaataag |
182 |
Q |
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||||| ||||||||||| ||||||||||| | | ||||||||||||||||||| |
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| T |
46688411 |
tctag-taatttgaaaagtggcttatatttagggacaaatttttagtcaaataag |
46688358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 181
Target Start/End: Original strand, 35779019 - 35779066
Alignment:
| Q |
134 |
taatttgaaaataagcttatatttatgaataaatttttagtcaaataa |
181 |
Q |
| |
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|||||||||||| || |||||||||| |||||||||||||||||||| |
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|
| T |
35779019 |
taatttgaaaattggcctatatttatggataaatttttagtcaaataa |
35779066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 34869997 - 34870042
Alignment:
| Q |
134 |
taatttgaaaataagcttatatttatgaataaatttttagtcaaat |
179 |
Q |
| |
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|||||| |||| ||||||||||||| |||||||||||||||||||| |
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| T |
34869997 |
taattttaaaaaaagcttatatttaagaataaatttttagtcaaat |
34870042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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