View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13393_low_11 (Length: 323)

Name: NF13393_low_11
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13393_low_11
NF13393_low_11
[»] chr4 (2 HSPs)
chr4 (77-317)||(55907344-55907584)
chr4 (1-52)||(55907259-55907310)
[»] chr2 (4 HSPs)
chr2 (77-317)||(1036086-1036326)
chr2 (219-317)||(1036422-1036520)
chr2 (1-52)||(1036001-1036052)
chr2 (163-214)||(44575173-44575224)
[»] chr5 (1 HSPs)
chr5 (164-232)||(41900247-41900315)
[»] chr6 (1 HSPs)
chr6 (162-215)||(6403848-6403901)
[»] chr3 (1 HSPs)
chr3 (167-232)||(513428-513493)
[»] chr7 (2 HSPs)
chr7 (186-226)||(10168825-10168865)
chr7 (186-226)||(10176350-10176390)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 77 - 317
Target Start/End: Original strand, 55907344 - 55907584
Alignment:
Q  77 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907344 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 55907443  T
Q  177 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907444 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 55907543  T
Q  277 aaaggttcacctacattacctaccttgatcttagttcctac 317  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  55907544 aaaggttcacctacattacctaccttgatcttagttcctac 55907584  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 55907259 - 55907310
Alignment:
Q  1 gaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55907259 gaagaagaacaacaacaatgaggttgagtaaactggttgctttcagaaacac 55907310  T

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Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 77 - 317
Target Start/End: Original strand, 1036086 - 1036326
Alignment:
Q  77 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036086 cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 1036185  T
Q  177 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttcc 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1036186 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttcc 1036285  T
Q  277 aaaggttcacctacattacctaccttgatcttagttcctac 317  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  1036286 aaaggttcaccaacattacctaccttgatcttagttcctac 1036326  T

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Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 1036422 - 1036520
Alignment:
Q  219 cttcgattctctctaattatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcacctacattacctaccttgatcttagttcctac 317  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1036422 cttcgattctctctaactatcctctatcaaacttgcactttcctccctcgtctcttccaaaggttcaccaacattacctaccttgatcttagttcctac 1036520  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1036001 - 1036052
Alignment:
Q  1 gaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 52  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036001 gaagaagaagaacaacaatgaggttgaataaactggttgctttcagaaacac 1036052  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 44575173 - 44575224
Alignment:
Q  163 gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaa 214  Q
    |||||||||| |||||||| | |||||| ||||||||||||||| |||||||    
T  44575173 gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
Q  164 ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 232  Q
    |||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||    
T  41900247 ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct 41900315  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 6403901 - 6403848
Alignment:
Q  162 cgctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaac 215  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||    
T  6403901 cgctacttgaaatctctctcagccgtatccaaacagttcctctctatcaccaac 6403848  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 232
Target Start/End: Original strand, 513428 - 513493
Alignment:
Q  167 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 232  Q
    |||||||||||||||  ||||||| |||||||| |||||  ||||||||| ||| |||||||||||    
T  513428 cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 10168825 - 10168865
Alignment:
Q  186 gtctccaaacagtttctctcagtcaccaacactcttcgatt 226  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10168825 gtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 10176350 - 10176390
Alignment:
Q  186 gtctccaaacagtttctctcagtcaccaacactcttcgatt 226  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10176350 gtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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