View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_13 (Length: 314)
Name: NF13393_low_13
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 45512993 - 45513299
Alignment:
| Q |
1 |
tctttattaaatctttcactgtctggatgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctct |
100 |
Q |
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| T |
45512993 |
tctttattaaatctttcactgtctggatgtagagttgacaattcactcattcctcgttatgctttccaaaacatgacatctcttatctatcttgatctct |
45513092 |
T |
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| Q |
101 |
catcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccatt |
200 |
Q |
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| T |
45513093 |
catcaaatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccatt |
45513192 |
T |
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| Q |
201 |
atggttcagtcactttgagaaacttacccttcttgacctttcttacaatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggtt |
300 |
Q |
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| T |
45513193 |
atggttcggtcactttgagaaacttacccttcttgacctttcttataatgggctttatggtcaaatacctcatgctttcacgaacttgtcatccctggtg |
45513292 |
T |
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| Q |
301 |
catctca |
307 |
Q |
| |
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||||||| |
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| T |
45513293 |
catctca |
45513299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 45513524 - 45513624
Alignment:
| Q |
106 |
aatgagcttcatggtccgattcctgagtcttttggaaacatgacttccattgaatcactctacctttctggaaataatttcacttctattccattatggt |
205 |
Q |
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| T |
45513524 |
aatgagcttcatggtccaattccaggggtttttcgaaacatgacttcaattgaataccttagcctttctaaaaatagtttaacttcaattccatcatggt |
45513623 |
T |
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| Q |
206 |
t |
206 |
Q |
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| T |
45513624 |
t |
45513624 |
T |
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