View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_14 (Length: 309)
Name: NF13393_low_14
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_14 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 1982066 - 1982346
Alignment:
| Q |
9 |
gcagagatcgacgatgatggtggctgagttttgagcagattcagttgcttcaatggtggattcaatgacttcaattgcggcagagacatcatagttgtgt |
108 |
Q |
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| T |
1982066 |
gcagagatcgacgatgatggtggctgagttttgagcagattcagttgcttcaatggtggattcaatgacttcaattgcagcagagacatcatagttgtgt |
1982165 |
T |
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| Q |
109 |
tgtgtggtggtgccttcggcggtggcgttgaagtggtgttgtcatgtggtttcttaaaaggtgttactcttagacactaagtttcttcttcatgtggctc |
208 |
Q |
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| T |
1982166 |
tgtgtggtggtgccttcggcggtggcgttgaagtggtgttgtcatgtggtttcttaaaaggcgttactcttagacactaagtttcttcttcatgtggctc |
1982265 |
T |
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| Q |
209 |
aacttctttttcctcaagactctcctctttcaaattttctttgaatttttcaagcttctggaagatttttgtgcatgctat |
289 |
Q |
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| T |
1982266 |
aacttctttttcctcaagactctcctctttcaaattttctttgaatttttcaagcttctggaagatttttgtgcatgctat |
1982346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 139 - 289
Target Start/End: Original strand, 25839962 - 25840112
Alignment:
| Q |
139 |
aagtggtgttgtcatgtggtttcttaaaaggtgttactcttagacactaagtttcttcttcatgtggctcaacttctttttcctcaagactctcctcttt |
238 |
Q |
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| T |
25839962 |
aagtcgtgctgtcatgtgtttgtttaagaggtgttactattagacactgagttgcttcttcgtgtggttcaccttattttttctcggcactctcctcttt |
25840061 |
T |
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| Q |
239 |
caaattttctttgaatttttcaagcttctggaagatttttgtgcatgctat |
289 |
Q |
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| T |
25840062 |
caaattttcttttaatttttcaaacttctcgaagatttttgcgcaggctat |
25840112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 37089540 - 37089594
Alignment:
| Q |
7 |
gagcagagatcgacgatgatggtggctgagttttgagcagattcagttgcttcaa |
61 |
Q |
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| T |
37089540 |
gagcagagattaacgatggtggcggctgagttttgagcagattcagtcgcttcaa |
37089594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 20875 - 20799
Alignment:
| Q |
108 |
ttgtgtggtggtgccttcggcggtggcgttgaagtggtgttgtcatgtggtttcttaaaaggtgttactcttagaca |
184 |
Q |
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| T |
20875 |
ttgtgtggtggtgccctggacggtggcgctgaagtggtgttgatgtatggttgcttaagaggtgctactcgtagaca |
20799 |
T |
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