View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_16 (Length: 280)
Name: NF13393_low_16
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_16 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 3896966 - 3896696
Alignment:
| Q |
10 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
109 |
Q |
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| T |
3896966 |
atgaacaaagacctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
3896867 |
T |
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| Q |
110 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
209 |
Q |
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| T |
3896866 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcatcctct |
3896767 |
T |
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| Q |
210 |
ggacttttgatgacatggtaaaatgtctataccataatcatcacgtcaaagcattttgattaataatcatt |
280 |
Q |
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| T |
3896766 |
ggacttttgatgacatggtaaaatgtctatacaataatcatcacgtcaaagcattttgattaataatcatt |
3896696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 46285038 - 46285194
Alignment:
| Q |
82 |
actgaatcaattttcttttccttgttgataggctttagatgaagcacgtaatgagct---caaattgggagatgaatactacaaagacagcacggttcgc |
178 |
Q |
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| T |
46285038 |
actgaaacaatattcttttccttctggataggcttttgaggaagcaattgctgaactggacacattgggagaagaatcctacaaagacagcacacttata |
46285137 |
T |
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| Q |
179 |
atgcaacttttgagaaacaacatcaccctctggacttttgatgacatggtaaaatgt |
235 |
Q |
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| T |
46285138 |
atgcaacttttgagagacaacctcaccctttggacttctgatgtccaggtaaaatgt |
46285194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 4620 - 4350
Alignment:
| Q |
10 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacatgtactgaatcaattttcttttccttgttga |
109 |
Q |
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| T |
4620 |
atgaacaaaggcctattcttatcaaatgctttatgtgtctctcttttctgttcatgtttggcttgtacttgtactgaatcaattttattttccttgttga |
4521 |
T |
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| Q |
110 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
209 |
Q |
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| T |
4520 |
taggctttagatgaagcacgtaatgagctcaaattgggagatgaatactacaaagacagcacggttcgcatgcaacttttgagaaacaacatcaccctct |
4421 |
T |
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| Q |
210 |
ggacttttgatgacatggtaaaatgtctataccataatcatcacgtcaaagcattttgattaataatcatt |
280 |
Q |
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| T |
4420 |
ggacttttgatgacacggtaaaatgtctatacaataatcatcacgtcaaagcattttgattaataatcatt |
4350 |
T |
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