View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13393_low_19 (Length: 248)

Name: NF13393_low_19
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13393_low_19
NF13393_low_19
[»] chr2 (9 HSPs)
chr2 (43-216)||(3295836-3296013)
chr2 (218-248)||(9120059-9120089)
chr2 (218-248)||(16269582-16269612)
chr2 (218-248)||(20605043-20605073)
chr2 (218-248)||(22552052-22552082)
chr2 (218-248)||(24776246-24776276)
chr2 (218-248)||(31170913-31170943)
chr2 (219-248)||(14198865-14198894)
chr2 (219-248)||(44765667-44765696)
[»] scaffold0151 (1 HSPs)
scaffold0151 (218-248)||(38807-38837)
[»] scaffold0037 (1 HSPs)
scaffold0037 (218-248)||(100101-100131)
[»] chr8 (5 HSPs)
chr8 (218-248)||(7507185-7507215)
chr8 (218-248)||(23115454-23115484)
chr8 (218-248)||(42735563-42735593)
chr8 (212-248)||(24214877-24214913)
chr8 (220-248)||(41478989-41479017)
[»] chr7 (8 HSPs)
chr7 (218-248)||(973074-973104)
chr7 (218-248)||(8078286-8078316)
chr7 (218-248)||(30440687-30440717)
chr7 (218-248)||(34008906-34008936)
chr7 (218-248)||(40996936-40996966)
chr7 (218-248)||(44343682-44343712)
chr7 (219-248)||(32143206-32143235)
chr7 (220-248)||(20275549-20275577)
[»] chr6 (2 HSPs)
chr6 (218-248)||(2301024-2301054)
chr6 (218-248)||(6197764-6197794)
[»] chr5 (3 HSPs)
chr5 (218-248)||(7016983-7017013)
chr5 (218-248)||(21146957-21146987)
chr5 (218-248)||(43319136-43319166)
[»] chr4 (8 HSPs)
chr4 (218-248)||(1044699-1044729)
chr4 (218-248)||(22201904-22201934)
chr4 (218-248)||(24131259-24131289)
chr4 (218-248)||(28541587-28541617)
chr4 (218-248)||(30009964-30009994)
chr4 (218-248)||(42786656-42786686)
chr4 (215-248)||(37046739-37046772)
chr4 (220-248)||(31315015-31315043)
[»] chr3 (6 HSPs)
chr3 (218-248)||(996372-996402)
chr3 (218-248)||(3206483-3206513)
chr3 (218-248)||(12734127-12734157)
chr3 (218-248)||(20498099-20498129)
chr3 (218-248)||(22057652-22057682)
chr3 (218-248)||(33996778-33996808)
[»] chr1 (7 HSPs)
chr1 (218-248)||(730032-730062)
chr1 (218-248)||(953702-953732)
chr1 (218-248)||(19452137-19452167)
chr1 (218-248)||(21222031-21222061)
chr1 (218-248)||(28824659-28824689)
chr1 (218-248)||(45760297-45760327)
chr1 (220-248)||(47654641-47654669)
[»] scaffold0651 (1 HSPs)
scaffold0651 (220-248)||(8654-8682)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 43 - 216
Target Start/End: Original strand, 3295836 - 3296013
Alignment:
Q  43 tgtgaggaatcaaaattaatagcataaaaatccagctatgaatgatagggatatataggaattactgagttgacaatatatgactgtaaccaactaatgc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3295836 tgtgaggaatcaaaattaatagcataaaaatccagctatgaatgatagggatatataggaattactgagttgacaatatatgactgtaaccaactaatgc 3295935  T
Q  143 atgaggaattgtgtgtgaatacacaaaataatattgcatt----atggataagtatatttttaccattgaatcattaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  3295936 atgaggaattgtgtgtgaatacacaaaataatattgcattatgcatggataagtatatttttaccattgaatcattaa 3296013  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 9120059 - 9120089
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  9120059 gggtgtattggatcatgattctaagggattt 9120089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 16269582 - 16269612
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  16269582 gggtgtattggatcatgattctaagggattt 16269612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 20605043 - 20605073
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  20605043 gggtgtattggatcatgattctaagggattt 20605073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 22552082 - 22552052
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  22552082 gggtgtattggatcatgattctaagggattt 22552052  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 24776246 - 24776276
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  24776246 gggtgtattggatcatgattctaagggattt 24776276  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 31170943 - 31170913
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  31170943 gggtgtattggatcatgattctaagggattt 31170913  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 14198894 - 14198865
Alignment:
Q  219 ggtgtattggatcatgattctaagggattt 248  Q
    ||||||||||||||||||||||||||||||    
T  14198894 ggtgtattggatcatgattctaagggattt 14198865  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 44765667 - 44765696
Alignment:
Q  219 ggtgtattggatcatgattctaagggattt 248  Q
    ||||||||||||||||||||||||||||||    
T  44765667 ggtgtattggatcatgattctaagggattt 44765696  T

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Target: scaffold0151 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 38837 - 38807
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  38837 gggtgtattggatcatgattctaagggattt 38807  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 100101 - 100131
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  100101 gggtgtattggatcatgattctaagggattt 100131  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 7507215 - 7507185
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  7507215 gggtgtattggatcatgattctaagggattt 7507185  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 23115484 - 23115454
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  23115484 gggtgtattggatcatgattctaagggattt 23115454  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 42735593 - 42735563
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  42735593 gggtgtattggatcatgattctaagggattt 42735563  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 24214913 - 24214877
Alignment:
Q  212 attaacgggtgtattggatcatgattctaagggattt 248  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  24214913 attaaggggtgtattggatcatgattctaaaggattt 24214877  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 41478989 - 41479017
Alignment:
Q  220 gtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||    
T  41478989 gtgtattggatcatgattctaagggattt 41479017  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 973074 - 973104
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  973074 gggtgtattggatcatgattctaagggattt 973104  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 8078286 - 8078316
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  8078286 gggtgtattggatcatgattctaagggattt 8078316  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 30440687 - 30440717
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  30440687 gggtgtattggatcatgattctaagggattt 30440717  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 34008906 - 34008936
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  34008906 gggtgtattggatcatgattctaagggattt 34008936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 40996966 - 40996936
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  40996966 gggtgtattggatcatgattctaagggattt 40996936  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 44343712 - 44343682
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  44343712 gggtgtattggatcatgattctaagggattt 44343682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 32143235 - 32143206
Alignment:
Q  219 ggtgtattggatcatgattctaagggattt 248  Q
    ||||||||||||||||||||||||||||||    
T  32143235 ggtgtattggatcatgattctaagggattt 32143206  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 20275577 - 20275549
Alignment:
Q  220 gtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||    
T  20275577 gtgtattggatcatgattctaagggattt 20275549  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 2301054 - 2301024
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  2301054 gggtgtattggatcatgattctaagggattt 2301024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 6197794 - 6197764
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  6197794 gggtgtattggatcatgattctaagggattt 6197764  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 7017013 - 7016983
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  7017013 gggtgtattggatcatgattctaagggattt 7016983  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 21146957 - 21146987
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  21146957 gggtgtattggatcatgattctaagggattt 21146987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 43319136 - 43319166
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  43319136 gggtgtattggatcatgattctaagggattt 43319166  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 1044699 - 1044729
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  1044699 gggtgtattggatcatgattctaagggattt 1044729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 22201904 - 22201934
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  22201904 gggtgtattggatcatgattctaagggattt 22201934  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 24131289 - 24131259
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  24131289 gggtgtattggatcatgattctaagggattt 24131259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 28541587 - 28541617
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  28541587 gggtgtattggatcatgattctaagggattt 28541617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 30009994 - 30009964
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  30009994 gggtgtattggatcatgattctaagggattt 30009964  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 42786656 - 42786686
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  42786656 gggtgtattggatcatgattctaagggattt 42786686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 37046772 - 37046739
Alignment:
Q  215 aacgggtgtattggatcatgattctaagggattt 248  Q
    ||||||||||||||||||||||||||||| ||||    
T  37046772 aacgggtgtattggatcatgattctaaggaattt 37046739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 31315043 - 31315015
Alignment:
Q  220 gtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||    
T  31315043 gtgtattggatcatgattctaagggattt 31315015  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 996402 - 996372
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  996402 gggtgtattggatcatgattctaagggattt 996372  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 3206513 - 3206483
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  3206513 gggtgtattggatcatgattctaagggattt 3206483  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 12734157 - 12734127
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  12734157 gggtgtattggatcatgattctaagggattt 12734127  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 20498099 - 20498129
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  20498099 gggtgtattggatcatgattctaagggattt 20498129  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 22057652 - 22057682
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  22057652 gggtgtattggatcatgattctaagggattt 22057682  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 33996808 - 33996778
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  33996808 gggtgtattggatcatgattctaagggattt 33996778  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 730032 - 730062
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  730032 gggtgtattggatcatgattctaagggattt 730062  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 953702 - 953732
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  953702 gggtgtattggatcatgattctaagggattt 953732  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 19452167 - 19452137
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  19452167 gggtgtattggatcatgattctaagggattt 19452137  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 21222031 - 21222061
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  21222031 gggtgtattggatcatgattctaagggattt 21222061  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 28824689 - 28824659
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  28824689 gggtgtattggatcatgattctaagggattt 28824659  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Complemental strand, 45760327 - 45760297
Alignment:
Q  218 gggtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||||    
T  45760327 gggtgtattggatcatgattctaagggattt 45760297  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 47654669 - 47654641
Alignment:
Q  220 gtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||    
T  47654669 gtgtattggatcatgattctaagggattt 47654641  T

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Target: scaffold0651 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 8654 - 8682
Alignment:
Q  220 gtgtattggatcatgattctaagggattt 248  Q
    |||||||||||||||||||||||||||||    
T  8654 gtgtattggatcatgattctaagggattt 8682  T

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