View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13393_low_20 (Length: 239)
Name: NF13393_low_20
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_20 |
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| [»] scaffold0557 (2 HSPs) |
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| [»] scaffold0442 (2 HSPs) |
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| [»] scaffold0115 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 21006151 - 21005948
Alignment:
| Q |
23 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21006151 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactc |
21006052 |
T |
|
| Q |
123 |
atgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
21006051 |
atgatggtgttcttgttttgttgaacactttcaggatagatttgacgctgcatgttttgattgacattgtgatttggaatcatagtactcatgttgttct |
21005952 |
T |
|
| Q |
223 |
tctc |
226 |
Q |
| |
|
|||| |
|
|
| T |
21005951 |
tctc |
21005948 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 20903435 - 20903234
Alignment:
| Q |
23 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactc |
122 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||||||||||||||||| |
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|
| T |
20903435 |
attcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactc |
20903336 |
T |
|
| Q |
123 |
atgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttct |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||| | | ||||||||| | |||||| ||| ||| ||| ||||||||||||||||||||| ||||||||| |
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|
| T |
20903335 |
atgatggtgttcttgttctgttgaacacttccggtgtagatttgatgttgcatgctttgattaacaccctgatttggaatcatagtactcatgttgttct |
20903236 |
T |
|
| Q |
223 |
tc |
224 |
Q |
| |
|
|| |
|
|
| T |
20903235 |
tc |
20903234 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 20922035 - 20921838
Alignment:
| Q |
23 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactc |
122 |
Q |
| |
|
|||||||||| |||| ||| |||||| ||||||||||||||||||||| || ||||| |||| ||| ||||||||||||||||||||||||||| |
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| T |
20922035 |
attcatcatggtgtttctcttctgttgttgatgaacacttgaagtgtagacctgaggatgcaagttt------acactaggagttggaaccatagtactc |
20921942 |
T |
|
| Q |
123 |
atgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttct |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| ||| ||||| | |||||||||||||||||||||| ||||||||| |
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|
| T |
20921941 |
atgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattgataccgtgatttggaatcatagtactcatgttgttct |
20921842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 21005900 - 21005850
Alignment:
| Q |
130 |
tgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttt |
180 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
21005900 |
tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgtttt |
21005850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 41336593 - 41336390
Alignment:
| Q |
23 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactc |
122 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||||||||||||||||| |
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|
| T |
41336593 |
attcatcatggtgttgctcttctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactc |
41336494 |
T |
|
| Q |
123 |
atgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttct |
222 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
41336493 |
atgatggtgttcttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttct |
41336394 |
T |
|
| Q |
223 |
tctc |
226 |
Q |
| |
|
|||| |
|
|
| T |
41336393 |
tctc |
41336390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 5772 - 5981
Alignment:
| Q |
23 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttg------catgttagaattaacactaggagttggaaccata |
116 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||| ||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
5772 |
attcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgaaactgaatgtgcatgttttgattaacactaggagttggaaccata |
5871 |
T |
|
| Q |
117 |
gtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||| ||| ||| || ||||||||||||||||||| ||| |
|
|
| T |
5872 |
gtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgacgttgcatgctttgattaacaccgtaatttggaatcatagtactcatgt |
5971 |
T |
|
| Q |
217 |
tgttcttctc |
226 |
Q |
| |
|
|||||||||| |
|
|
| T |
5972 |
tgttcttctc |
5981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 5280 - 5070
Alignment:
| Q |
23 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggt------tgcatgttagaattaacactaggagttggaaccata |
116 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||| ||||||||||||||| ||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
5280 |
attcatcatggtgttgctcttctgttgttgattaacacttgaagtgtagacttgagacagcacgtgcatgttttcattaacacttggagttggaaccata |
5181 |
T |
|
| Q |
117 |
gtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgt |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||| ||| ||| ||| |||||||| ||||||||||| || ||| |
|
|
| T |
5180 |
gtactcacgatggtgttcttgttttgttgaacacttctagggtagatttgacgctacatgctttaattaacactgtgatttagaatcatagtattcatgt |
5081 |
T |
|
| Q |
217 |
tgttcttctca |
227 |
Q |
| |
|
||||||||||| |
|
|
| T |
5080 |
tgttcttctca |
5070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 9166 - 9374
Alignment:
| Q |
23 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgt------tagaattaacactaggagttggaaccata |
116 |
Q |
| |
|
|||||||||| |||||||| |||||||||||| ||||||||||||||| |||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
9166 |
attcatcatggtgttgctcttctgttcttgattaacacttgaagtgtagacttgaaactgcatgtgcatgttttgattaacactaggagttggaaccata |
9265 |
T |
|
| Q |
117 |
gtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||| ||| ||| ||| || ||||||||||||||||||| ||| |
|
|
| T |
9266 |
gtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacaccgtaatttggaatcatagtactcatgt |
9365 |
T |
|
| Q |
217 |
tgttcttct |
225 |
Q |
| |
|
||||||||| |
|
|
| T |
9366 |
tgttcttct |
9374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 227
Target Start/End: Complemental strand, 8566 - 8435
Alignment:
| Q |
96 |
acactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgat |
195 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||| |||||| ||| ||| ||| ||||| |
|
|
| T |
8566 |
acactaggagtttgaaccatagtactcacaatggtgttcttgttttgttgaacacttctagggttgatttgacgttgcatgctttaattaacaccgtgat |
8467 |
T |
|
| Q |
196 |
ttggaatcatagtactcgtgttgttcttctca |
227 |
Q |
| |
|
|| ||||||||||| || |||||||||||||| |
|
|
| T |
8466 |
ttagaatcatagtattcatgttgttcttctca |
8435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 226
Target Start/End: Complemental strand, 47058 - 46924
Alignment:
| Q |
92 |
attaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||||||| |||||| ||| ||| ||| | |
|
|
| T |
47058 |
attaacactaggagttggaaccatagtactcacgatgatgttcttgtattgttgaacacttccagggtagatttgacgttgcatgctttgattaacaccg |
46959 |
T |
|
| Q |
192 |
tgatttggaatcatagtactcgtgttgttcttctc |
226 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| |
|
|
| T |
46958 |
tgatttggaatcatggtactcatgttgttcttctc |
46924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 47884 - 48039
Alignment:
| Q |
23 |
attcatcatgttgttgctcctctgttcttgatgaacacttgaagtgtaaacttgaggttgc---------atgttagaattaacactaggagttggaacc |
113 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||| ||||||||||| ||| ||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
47884 |
attcatcatggtgttgctcttctgttgttgattaacacttgaagcgtagacttgagactgctgcatgtgcatgttttgattaacactaggagttggaacc |
47983 |
T |
|
| Q |
114 |
atagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacg |
169 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
47984 |
ataatactcacgatggtgttcttgttttgttgaacacttacaagctagatttgacg |
48039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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