View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13393_low_21 (Length: 234)

Name: NF13393_low_21
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13393_low_21
NF13393_low_21
[»] chr4 (3 HSPs)
chr4 (2-216)||(23596743-23596957)
chr4 (1-216)||(23587891-23588106)
chr4 (9-204)||(54396226-54396421)
[»] chr7 (4 HSPs)
chr7 (7-218)||(8017569-8017780)
chr7 (9-218)||(8102470-8102679)
chr7 (1-216)||(39985441-39985656)
chr7 (170-215)||(8581664-8581709)
[»] chr2 (7 HSPs)
chr2 (29-210)||(17716851-17717032)
chr2 (14-210)||(17666847-17667043)
chr2 (1-210)||(17648205-17648414)
chr2 (14-210)||(17622109-17622305)
chr2 (29-208)||(17718117-17718296)
chr2 (1-90)||(17705997-17706086)
chr2 (38-210)||(17704219-17704391)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 23596957 - 23596743
Alignment:
Q  2 acactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596957 acactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgag 23596858  T
Q  102 taatggtagtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23596857 taatggtagtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagt 23596758  T
Q  202 tctcaaccttctaag 216  Q
    |||||||||||||||    
T  23596757 tctcaaccttctaag 23596743  T

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Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 23588106 - 23587891
Alignment:
Q  1 gacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  23588106 gacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaacagatccatgttgagctcttcaaaacgagcccga 23588007  T
Q  101 gtaatggtagtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcag 200  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  23588006 gtgatggtagtgtaaaagtcaataccctcaaacaatgaatcaatttcaatggtggtttgagcagtagaggaaagggtcctcttagctctctcgcaagcag 23587907  T
Q  201 ttctcaaccttctaag 216  Q
    ||||||| ||||||||    
T  23587906 ttctcaatcttctaag 23587891  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 54396226 - 54396421
Alignment:
Q  9 tcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggt 108  Q
    ||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| | |||||| || |  |||||||| |  || |  ||||| ||    
T  54396226 tcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttcaaatctcgcccttgtaatagt 54396325  T
Q  109 agtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttct 204  Q
     |  || || ||||| || |||||||||||||||||||| || || || |||||||| || ||||| || |||||||||||||||||||| |||||    
T  54396326 tgcatagaaatcaattccttcaaacaaagaatcaatttctattgttgtctgagcagttgaagaaagtgttctcttagctctctcacaagctgttct 54396421  T

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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 7 - 218
Target Start/End: Complemental strand, 8017780 - 8017569
Alignment:
Q  7 gttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatg 106  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||| || || ||||| |  || || || ||     
T  8017780 gttcttgtccatcttagcatctctcaaacacttctcaacaggctccatacactttctgaacagatccatgttaagttcctcaaatcttgcacgggtgatt 8017681  T
Q  107 gtagtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctca 206  Q
    || |||||||| |||| ||||||||||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| |||||||||||||| || ||||    
T  8017680 gtggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcagtagaagagagagttctcttcgctctctcacaagctgtcctca 8017581  T
Q  207 accttctaagtg 218  Q
    |||| |||||||    
T  8017580 acctcctaagtg 8017569  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 8102470 - 8102679
Alignment:
Q  9 tcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggt 108  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| || || ||||| |  || || || || ||    
T  8102470 tcttgtccatcttagcatctctcaaacacttctcaacaggctccatacacttcctgaacagatccatgttaagttcctcaaatctggcacgggtgattgt 8102569  T
Q  109 agtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaac 208  Q
     |||||||| |||| ||||||||||||||||||||| |||||||| ||||| || || || || ||||| ||||| ||||||||||| || ||||||||     
T  8102570 ggtgtaaaaatcaacaccctcaaacaaagaatcaatctcaatggtagtttgtgcggttgatgagagagttctcttcgctctctcacatgcggttctcaat 8102669  T
Q  209 cttctaagtg 218  Q
    || |||||||    
T  8102670 ctcctaagtg 8102679  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 39985441 - 39985656
Alignment:
Q  1 gacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcga 100  Q
    |||||| ||||| |||||||| ||||| |||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||| ||||| |  || |||    
T  39985441 gacacttttcttgtccatcttggcatctctcaaacatttctcaactggctccatacattttctaaagagatccatgttgagctcctcaaatcttgcacga 39985540  T
Q  101 gtaatggtagtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcag 200  Q
    |||||||  | ||| || ||||| || ||||| | ||||||||||||||||||||| || |||||||| || ||||| ||||| ||||| ||||||||||    
T  39985541 gtaatgggggagtagaaatcaattccttcaaaaagagaatcaatttcaatggtggtctgggcagtagaagagagagttctcttcgctctttcacaagcag 39985640  T
Q  201 ttctcaaccttctaag 216  Q
    | |||||||| |||||    
T  39985641 tcctcaacctcctaag 39985656  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 8581664 - 8581709
Alignment:
Q  170 gaaagagtcctcttagctctctcacaagcagttctcaaccttctaa 215  Q
    ||||| ||||| || ||||||||||||||||| |||||||||||||    
T  8581664 gaaagtgtccttttcgctctctcacaagcagtcctcaaccttctaa 8581709  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 17717032 - 17716851
Alignment:
Q  29 ctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggtagtgtaaaagtcaataccct 128  Q
    |||||||| ||||||||  |||||||||| | ||| || ||||||| ||||||||||||||| |  || ||||||||||  || || || ||||| ||||    
T  17717032 ctcaaacatttctcaacttgctccatacattccctgaagagatccaagttgagctcttcaaatctggcacgagtaatgggggtatagaaatcaattccct 17716933  T
Q  129 caaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaacct 210  Q
    |||| | | ||||||||||||||||||| || |||||||| || ||||  ||||| || |||||||||||||| ||||||||    
T  17716932 caaatagacaatcaatttcaatggtggtctgggcagtagatgatagagctctcttcgccctctcacaagcagtcctcaacct 17716851  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 17667043 - 17666847
Alignment:
Q  14 tccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggtagtgt 113  Q
    |||||||||||||  |||||||| ||||||||  |||||||||| |||||||| |||||||||||||||||||||||    || |||||||||   | |     
T  17667043 tccatcttagcatttctcaaacatttctcaacttgctccatacatttcctaaagagatccatgttgagctcttcaaatgtggcacgagtaatgaaggagc 17666944  T
Q  114 aaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaacct 210  Q
    | || ||||| ||||| || | | | ||||||||||||||||| ||||||||||| || ||||  ||||| || |||||||||||||| | ||||||    
T  17666943 agaaatcaattccctcgaatagacattcaatttcaatggtggtctgagcagtagatgatagagctctcttcgccctctcacaagcagtccccaacct 17666847  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 17648414 - 17648205
Alignment:
Q  1 gacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcga 100  Q
    |||||| || || |||||| ||||||| ||||||||  |||||||  |||||||||| |||||||| ||||||||||||||||| ||||| |  || |||    
T  17648414 gacactttttttgtccatcctagcatctctcaaacatatctcaacttgctccatacatttcctaaagagatccatgttgagctcctcaaatcttgcacga 17648315  T
Q  101 gtaatggtagtgtaaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcag 200  Q
    |||||||  | | | || ||||| ||||| || | | ||||||||||||||||||||||   |||| | || ||||| ||||| ||  ||||||||||||    
T  17648314 gtaatggaggagcagaaatcaattccctcgaatagacaatcaatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcag 17648215  T
Q  201 ttctcaacct 210  Q
    | ||||||||    
T  17648214 tcctcaacct 17648205  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 17622305 - 17622109
Alignment:
Q  14 tccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggtagtgt 113  Q
    |||||| ||||||  |||||||| ||||||||  |||||||||| |||||||| |||||||||||||||| ||||||    || ||||||||||  | |     
T  17622305 tccatcctagcatttctcaaacatttctcaacttgctccatacatttcctaaagagatccatgttgagcttttcaaatgtggcacgagtaatgggggagc 17622206  T
Q  114 aaaagtcaataccctcaaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaacct 210  Q
    | || ||||| ||||| || | | ||||||||||||||||||||||  ||||| | || ||||| ||||| ||  ||||||||||||| ||||||||    
T  17622205 agaaatcaattccctcgaatagacaatcaatttcaatggtggtttggacagtaaatgatagagttctcttggccttctcacaagcagtcctcaacct 17622109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 208
Target Start/End: Complemental strand, 17718296 - 17718117
Alignment:
Q  29 ctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggtagtgtaaaagtcaataccct 128  Q
    |||||||| ||||||||  |||||||||| | ||| || ||||||| ||||||||||||||| |  || ||||||||||  || || || ||||| ||||    
T  17718296 ctcaaacatttctcaacttgctccatacattccctgaagagatccaagttgagctcttcaaatctggcacgagtaatgggggtatagaaatcaattccct 17718197  T
Q  129 caaacaaagaatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaac 208  Q
    |||| | | ||||||||||||||||||| || | |||||| || ||||  ||||| || |||||||||||||| ||||||    
T  17718196 caaatagacaatcaatttcaatggtggtctgggaagtagatgatagagctctcttcgccctctcacaagcagtcctcaac 17718117  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 17706086 - 17705997
Alignment:
Q  1 gacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaa 90  Q
    |||||| || || |||||||||||||| |||||||| ||||||||  |||||||||| |||||||| |||||||||||||||||||||||    
T  17706086 gacactttttttgtccatcttagcatctctcaaacatttctcaacttgctccatacatttcctaaagagatccatgttgagctcttcaaa 17705997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 17704391 - 17704219
Alignment:
Q  38 ttctcaacaggctccatacacttcctaaatagatccatgttgagctcttcaaaacgagcgcgagtaatggtagtgtaaaagtcaataccctcaaacaaag 137  Q
    ||||| |||| ||||||||| ||| |||| ||||||||||||||||||||||| |  || ||||||||| | ||| | || || || ||||  || |||     
T  17704391 ttctcgacagtctccatacatttcataaagagatccatgttgagctcttcaaatctggcacgagtaatgatggtgaagaaatccattcccttgaataaac 17704292  T
Q  138 aatcaatttcaatggtggtttgagcagtagaggaaagagtcctcttagctctctcacaagcagttctcaacct 210  Q
    || |||||||||||||||||||   |||| | || ||||| ||||| ||  ||||||||||||| ||||||||    
T  17704291 aaacaatttcaatggtggtttggagagtaaatgatagagttctcttggccttctcacaagcagtcctcaacct 17704219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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