View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_3 (Length: 469)
Name: NF13393_low_3
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 163 - 457
Target Start/End: Original strand, 43488410 - 43488703
Alignment:
| Q |
163 |
ggaacgagtatacaaaccatgctccctagacaacatagaattaatcaatacagaattaaaacacttaatgcatgtctgaaatcacgttgagttgatgaaa |
262 |
Q |
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| T |
43488410 |
ggaacgagtatataaaccatgctcc-taaacaacatagaattaatcaatacagaattaaaacacttaatgcatgtctgaaatcacgttgagttgatgaaa |
43488508 |
T |
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| Q |
263 |
tcatggtggtcttaccgtaatattattgaataaaattacggtgactcactgagattctattaaacttaccatcaattcaaacatacggttaacttctatg |
362 |
Q |
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| T |
43488509 |
tcatgatggtctcaccgtaatattattgaataaaattacggtgactcgctgagattctattaaacttaccatcaattcaaacatacggttaacttctatg |
43488608 |
T |
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| Q |
363 |
ttataagataagattaattggtgattgtgaaatcattgatatctcttgtaatagcaggaatgcaacttgaacttctagcaagcccaccacctttc |
457 |
Q |
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| T |
43488609 |
ttataagataagattaattggtgattgtgaaatcattgatatctcttgtaatagcaggaatgcaacttgaacttctagcaagcccaccacctttc |
43488703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 43488248 - 43488384
Alignment:
| Q |
1 |
atccttcaataaaaactatgatagtgattgggagagagacctaaaaaaccttatactcggatcaaaaggtatgactttagggttatgttatcttgatcaa |
100 |
Q |
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| T |
43488248 |
atccttcaataaaaactatgatagtgatagggagagagacctaaaaaaccttatactcggatcaaaaggtatgactttagggttatgttatcttgatcaa |
43488347 |
T |
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| Q |
101 |
accctaaagactctgaggagtagtcactagtcagtag |
137 |
Q |
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| T |
43488348 |
accctaaagactctgaggagtagtcactagtcagtag |
43488384 |
T |
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