View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_4 (Length: 379)
Name: NF13393_low_4
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 31543602 - 31543943
Alignment:
| Q |
20 |
aagagcctctccacccatcnnnnnnnttggaatattagctttgatttccaacttggaggcaattgaaccagaaaattcacaaattattgaaacaaaaggt |
119 |
Q |
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| T |
31543602 |
aagagcctctccacccatcaaaaaaattggaatattggctttgatttccaacttggaggcaattgaaccagaaaattcacaaattattgaaacaaaaggt |
31543701 |
T |
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| Q |
120 |
ggttacttagttagcacttaaacatataatttgtcccttgaaaccacccaaaaaggatgataaaagatattattttaggccacatattgatatcatctac |
219 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31543702 |
ggttacttagttagcacttatacatagaatttgtcccttgaaaccactcaaaaaggatgataaaagatattattttaggccacatattgatatgatctac |
31543801 |
T |
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| Q |
220 |
aaagttaataatgccattattatatagtttaaggctccaaactagtcttagtgataccatgctttttcttgctgataaaaacacagttcatgtgacctca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31543802 |
aaagttaataatgccattattatatagtttaaggctccaaactagtcttagtaataccatgcttttgcttgctgataaaaacacagttcatgtgacctca |
31543901 |
T |
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| Q |
320 |
aagtggggtttggaatcagaaaataaacaatttgtgaatatt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31543902 |
aagtggggtttggaatcagaaaataaacaatttgtgaatatt |
31543943 |
T |
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