View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_5 (Length: 379)
Name: NF13393_low_5
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 201954 - 202229
Alignment:
| Q |
11 |
catcatccattttatattcagaatctcttcttatgaaattggtccactacggccaaatttctctcctgcattttatagtctatatattggaatgaatttt |
110 |
Q |
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| T |
201954 |
catcatccattttatattcagaatctcttcttatgaaattggtccactacggccaaatttctctcctacatttcatagtctatatattggaatgaatttt |
202053 |
T |
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| Q |
111 |
ctttagtggatatctctttgatcttttaaagtgtgagaatctacacaattaaacattttatctcttctaacttcaatgtttaaattctttttgtatttaa |
210 |
Q |
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| T |
202054 |
cttcagtggatatctctttgatcttttaaagtgtgagaatctacaccattaaacattttatctcttctaacttcaatgtttaaattc--tgtgtatttaa |
202151 |
T |
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| Q |
211 |
caagacgaatatagtcgaannnnnnnnnngttaccagaggaaaaaatgattatggtcgattgacagagtatacaaaataa |
290 |
Q |
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| T |
202152 |
caagaggaatatagtcga--tttttttttgttaccagagggaaaaatgattatggtcgattgacagagtatacaaaataa |
202229 |
T |
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