View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_6 (Length: 375)
Name: NF13393_low_6
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 31825263 - 31824919
Alignment:
| Q |
14 |
catcaacgtgaacatatcaattttgtgagattaaaaggggaagagattattatnnnnnnn-ttgctcaattttgtttttagacttttcagagatatgtaa |
112 |
Q |
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| T |
31825263 |
catcaacgtgaacatatcaattttgtgagattaaaaggggaagagattattataaaaaaaattgttcaattttgtttttagacttttcagagatatgtaa |
31825164 |
T |
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| Q |
113 |
gttattacactttgagattctacacatgtttaaattttgttgtataccttatgagaattgcaacttgtttggatgagattcaaagaattcaatgctctct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
31825163 |
gttattacactttgagattctacacatgtttaaattttgttgtataccttatgagaattgcatcttgtttggatgagattcaaagaattcaatg--ctct |
31825066 |
T |
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| Q |
213 |
tttatttgaggtgatttagaagatggaagaaaaatttcattctgtgaattgtatgcaagtgatgatagcaaagaaattt-ggggtcttgggttgagatga |
311 |
Q |
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| T |
31825065 |
tttatttggggtgatttagaagatggaagaaaaatttcattctgtgaattgtatgcaagtgatgatagcaaagaaatttgggggtcttgggttgagatga |
31824966 |
T |
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| Q |
312 |
ttggaggttataaacgatgcttgtcttatgaagcttgggtgggagct |
358 |
Q |
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| T |
31824965 |
ttggaggttataaacgatgcttgtcttatgaagcttgggtgggagct |
31824919 |
T |
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Back To:
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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 187 - 356
Target Start/End: Complemental strand, 5245504 - 5245337
Alignment:
| Q |
187 |
gagattcaaagaattcaatgctctcttttatttgaggtgatttagaagatggaagaaaaatttcattctgtgaattgtatgcaagtgatgatagcaaaga |
286 |
Q |
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|||||||||||||||||| ||||| ||||||| ||||||| |||| |||||| ||| |||||| |||||||||| ||||||||||||| | | |||| |
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| T |
5245504 |
gagattcaaagaattcaacgctct--tttattttgggtgattcggaagctggaaggaaa-tttcatgctgtgaattggatgcaagtgatgaaacctaaga |
5245408 |
T |
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| Q |
287 |
aattt-ggggtcttgggttgagatgattggaggttataaacgatgcttgtcttatgaagcttgggtgggag |
356 |
Q |
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|||| ||||||||||||||||| |||||||||| ||| || |||||||| ||||||||||||||||| |
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| T |
5245407 |
aattcaggggtcttgggttgagaaagttggaggttaaaaatgactcttgtcttttgaagcttgggtgggag |
5245337 |
T |
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