View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13393_low_7 (Length: 363)
Name: NF13393_low_7
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13393_low_7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 2207844 - 2207499
Alignment:
| Q |
18 |
gaagaaactctttttccgatcttcctcacaaaaacttccatcaaaccctaaatccccaaattcttcatctcataaaccttgattaatatggttctcgcag |
117 |
Q |
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| T |
2207844 |
gaagaaactctttttccgatcttcctcagaaaaacttccatcaaaccctaaatccccaaatccttcatctcagaaatcttgatcaagatggtgctcgcag |
2207745 |
T |
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| Q |
118 |
atttaggagggagcattacgcgtgctctaaagcagatgagcaatgcaacaatcattgacgaaaaagttttgaacgaatgtctcaatgaaatcactcgcgc |
217 |
Q |
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| T |
2207744 |
atttaggagggagcattacgcgtgctctaaagcagatgagcaatgcaacaatcattgatgaaaaagttttgaacgaatgtctcaatgaaatcactcgcgc |
2207645 |
T |
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| Q |
218 |
tcttcttcaatccgatgttcaattcaagcttgttagagatatgcaaaccaatattaagaagattgttaatcttgatgatcttgctgctggtcataataaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2207644 |
tcttcttcaatccgatgttcaattcaagcttgttagggatatgcaaaccaatattaagaagattgttaatcttgatgatcttgctgctggtcataataaa |
2207545 |
T |
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| Q |
318 |
cgtagaatcatccaacaagtaatgctttttcctctttctccaattt |
363 |
Q |
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| T |
2207544 |
cgtagaatcatccaacaagtaatgctttttcctctttctcaaattt |
2207499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 226 - 355
Target Start/End: Complemental strand, 2209080 - 2208951
Alignment:
| Q |
226 |
aatccgatgttcaattcaagcttgttagagatatgcaaaccaatattaagaagattgttaatcttgatgatcttgctgctggtcataataaacgtagaat |
325 |
Q |
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| T |
2209080 |
aatccgatgttcaattcaagcttgttagagatatgcaaaccaatattaagaagattgttaatcttgatgatcttgttgctggtcataataaacgtagaat |
2208981 |
T |
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| Q |
326 |
catccaacaagtaatgctttttcctctttc |
355 |
Q |
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| T |
2208980 |
catccaacaagtaacgctttttcatctttc |
2208951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 2210314 - 2210097
Alignment:
| Q |
18 |
gaagaaactc-tttttccgatcttcctcacaaaaacttccatcaaaccctaaatccccaaattcttcatctcataaaccttgatt----aatatggttct |
112 |
Q |
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| T |
2210314 |
gaagaaactcctttttctgatcttcatcacaaaaactttcatcgatccccaaatctccaaatttttcatctcaaaaatcttctttcttcaagatggtgct |
2210215 |
T |
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| Q |
113 |
cgcagatttaggagggagcattacgcgtgctctaaagcagatgagcaatgcaacaatcattgacgaaaaagttttgaacgaatgtctcaatgaaatcact |
212 |
Q |
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|||| |||||||| |||||||||| |||||||||||| ||||| |||||||||||||| || ||| |||| ||||||||||| || |||||||||||| |
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| T |
2210214 |
cgcatatttaggatggagcattacaaatgctctaaagcaaatgagaaatgcaacaatcatcgatgaagaagtattgaacgaatgccttaatgaaatcact |
2210115 |
T |
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| Q |
213 |
cgcgctcttcttcaatcc |
230 |
Q |
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| T |
2210114 |
cgcgctcttcttcaatcc |
2210097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 339
Target Start/End: Original strand, 44822772 - 44822916
Alignment:
| Q |
195 |
tgtctcaatgaaatcactcgcgctcttcttcaatccgatgttcaattcaagcttgttagagatatgcaaaccaatattaagaagattgttaatcttgatg |
294 |
Q |
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||||||||||| |||| ||| ||||| |||||||||||||||| ||| ||||| || |||| ||||| | ||||| ||||| ||||||||||| || |
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| T |
44822772 |
tgtctcaatgagatcaatcgagctctccttcaatccgatgttcgtttcgagcttattcgagacatgcagattaatatcaagaacattgttaatctcgaac |
44822871 |
T |
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| Q |
295 |
atcttgctgctggtcataataaacgtagaatcatccaacaagtaa |
339 |
Q |
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| T |
44822872 |
aactcgccgccggtcataacaaacgcaagattatccaacaagtaa |
44822916 |
T |
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