View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13393_low_9 (Length: 329)

Name: NF13393_low_9
Description: NF13393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13393_low_9
NF13393_low_9
[»] chr6 (2 HSPs)
chr6 (1-314)||(21005656-21005969)
chr6 (70-124)||(21005990-21006044)
[»] scaffold0557 (5 HSPs)
scaffold0557 (67-129)||(5969-6031)
scaffold0557 (70-129)||(5885-5944)
scaffold0557 (163-203)||(5969-6009)
scaffold0557 (67-129)||(5021-5083)
scaffold0557 (70-130)||(5107-5167)
[»] scaffold0442 (4 HSPs)
scaffold0442 (67-129)||(9363-9425)
scaffold0442 (70-129)||(9279-9338)
scaffold0442 (67-129)||(8386-8448)
scaffold0442 (163-203)||(9363-9403)
[»] scaffold0115 (3 HSPs)
scaffold0115 (163-203)||(46896-46936)
scaffold0115 (70-129)||(46961-47020)
scaffold0115 (67-107)||(46896-46936)
[»] chr1 (1 HSPs)
chr1 (26-129)||(41336427-41336527)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 21005969 - 21005656
Alignment:
Q  1 tagtactcgtgttgttcttctctggttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggta 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005969 tagtactcatgttgttcttctctggttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggta 21005870  T
Q  101 gatttgaggctgcatgttttgattcacactactaggagttgaaaccatagcaatcatgacggtgttgttcttctcctgttgaacacttgcaggatagatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  21005869 gatttgaggctgcatgttttgattcacactactaggagttgaaaccatagcaatcatgacggtgttattcttctcctgttgaacacttgcagggtagatt 21005770  T
Q  201 tgaggcttaaagttttggataacaacaagaggagttggaataatgttggcaggtgaaataacattcatgtttgtgtttttattcacacaaccatttgatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21005769 tgaggcttaaagttttggataacaacaagaggagttggaataatgttggcaggtgaaataacattcatgtttgtgtttttattcacacaaccatttgatc 21005670  T
Q  301 aacatgtattgaat 314  Q
    ||||||||||||||    
T  21005669 aacatgtattgaat 21005656  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 21006044 - 21005990
Alignment:
Q  70 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgatt 124  Q
    ||||||||||||||||||||||| || | ||||||||| ||||||||||||||||    
T  21006044 tgttcttgttttgttgaacactttcaggatagatttgacgctgcatgttttgatt 21005990  T

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Target: scaffold0557 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 5969 - 6031
Alignment:
Q  67 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 129  Q
    |||||||||| |  ||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  5969 tgttgttcttctcctgttgaacacttgcatggtagatttgatggtgcatgttttgattaacac 6031  T

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Target: scaffold0557; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 5885 - 5944
Alignment:
Q  70 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 129  Q
    ||||||||||||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  5885 tgttcttgttttgttgaacacttccagggtagatttgacgttgcatgctttgattaacac 5944  T

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Target: scaffold0557; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 5969 - 6009
Alignment:
Q  163 tgttgttcttctcctgttgaacacttgcaggatagatttga 203  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  5969 tgttgttcttctcctgttgaacacttgcatggtagatttga 6009  T

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Target: scaffold0557; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 5083 - 5021
Alignment:
Q  67 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 129  Q
    |||||||||| |  |||||||||||| ||| |||||||||| | |||||||||||||| ||||    
T  5083 tgttgttcttctcatgttgaacactttcattgtagatttgatggtgcatgttttgattaacac 5021  T

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Target: scaffold0557; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 5167 - 5107
Alignment:
Q  70 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacact 130  Q
    |||||||||||||||||||||||  | ||||||||||| ||| |||| ||| ||| |||||    
T  5167 tgttcttgttttgttgaacacttctagggtagatttgacgctacatgctttaattaacact 5107  T

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Target: scaffold0442 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 9363 - 9425
Alignment:
Q  67 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 129  Q
    |||||||||| |  ||||||||||||||||||||||||||| | |||||||||||||| ||||    
T  9363 tgttgttcttctactgttgaacacttgcatggtagatttgatggtgcatgttttgattaacac 9425  T

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Target: scaffold0442; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 9279 - 9338
Alignment:
Q  70 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 129  Q
    ||||||||||||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  9279 tgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacac 9338  T

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Target: scaffold0442; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 8448 - 8386
Alignment:
Q  67 tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 129  Q
    |||||||||| |  ||||||||||||  ||||||||||||| | |||||||||||||| ||||    
T  8448 tgttgttcttctcatgttgaacacttttatggtagatttgatggtgcatgttttgattaacac 8386  T

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Target: scaffold0442; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 9363 - 9403
Alignment:
Q  163 tgttgttcttctcctgttgaacacttgcaggatagatttga 203  Q
    |||||||||||| |||||||||||||||| | |||||||||    
T  9363 tgttgttcttctactgttgaacacttgcatggtagatttga 9403  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 46936 - 46896
Alignment:
Q  163 tgttgttcttctcctgttgaacacttgcaggatagatttga 203  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  46936 tgttgttcttctcctgttgaacacttgcatggtagatttga 46896  T

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Target: scaffold0115; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 47020 - 46961
Alignment:
Q  70 tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac 129  Q
    ||||||||| ||||||||||||| || ||||||||||| | |||||| ||||||| ||||    
T  47020 tgttcttgtattgttgaacacttccagggtagatttgacgttgcatgctttgattaacac 46961  T

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Target: scaffold0115; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 46936 - 46896
Alignment:
Q  67 tgttgttcttgttttgttgaacacttgcatggtagatttga 107  Q
    |||||||||| |  |||||||||||||||||||||||||||    
T  46936 tgttgttcttctcctgttgaacacttgcatggtagatttga 46896  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 41336527 - 41336427
Alignment:
Q  26 ttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattc 125  Q
    ||||| ||||||||||  ||||| ||| |||||| ||| ||||||   |||||| |||||||||||| ||  |||||||||| | |||||| |||||||     
T  41336527 ttgattaacaccaggagttggaaccatagtactcatgatggtgtt---cttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattg 41336431  T
Q  126 acac 129  Q
    ||||    
T  41336430 acac 41336427  T

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