View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13394_high_3 (Length: 488)
Name: NF13394_high_3
Description: NF13394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13394_high_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 20222390 - 20222861
Alignment:
| Q |
19 |
gctaggtgtactactggggtctctaatcccattcgctcccctagctttctctcagggtcgaaccagcagagtgctttcgccattgatgttccttc----- |
113 |
Q |
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| T |
20222390 |
gctaggtgtactactggggtctctaatcccattcgctcccctagctttctctcagggtcgaatcagcagagtgctttcgcctttgatgttccttccgatc |
20222489 |
T |
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| Q |
114 |
------------aacgatccactggaataaaatcttctcttataaaattctttttcgtaattattttacacatttctcgaatagtactctcctattgaat |
201 |
Q |
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| || |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||| |||||| |
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| T |
20222490 |
tctacggatttcatcgctccactggaataaaatcttctcttataaaattcttta--gtaattgttttacacattactccaatagtactctctatttgaat |
20222587 |
T |
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| Q |
202 |
gagcaaattcaagctatggtatcacaaataaatttaaacctacgagtttaaaagcagctttatacataaaatgtctacactattgtattacattgattac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
20222588 |
gagcaaattcaagctatggtatcacaaataaatttaaacctacgagtttaaaagcagctttatacacaaaatgtctac--tattgtattacattgattac |
20222685 |
T |
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| Q |
302 |
aaactcatcaaaatgagttcttaagttagaagaaaatgttgcaagtatctaagaccattgtcaataccaacatatctccaatcaacaacactcataatcc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20222686 |
aaactcatcaaaatgagttcttaagttagaagaaaatgttgcaagtatctaagaccatcgtcaataccaacatacctccaatcaacaacactcataatcc |
20222785 |
T |
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| Q |
402 |
cgacactcaccttcccaaccctcacttccccaccaccatcatcactttctctacaaccgcacatccccaccttcat |
477 |
Q |
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| T |
20222786 |
caacactcaccttcccaaccctcacttccccaccaccatcatcactttctctacaaccgcacatccccaccttcat |
20222861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 187961 - 188055
Alignment:
| Q |
28 |
actactggggtctctaatcccattcgctcccctagctttc---------tctcagggtcgaaccagcagagtgctttcgccattgatgttccttc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||| ||||||||| |
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| T |
187961 |
actactggggtctctaatcccattcgctcccctagctttcgtctctcagtgtcagtgtcggcccagcagagtgctttcgccattggtgttccttc |
188055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 13224528 - 13224622
Alignment:
| Q |
28 |
actactggggtctctaatcccattcgctcccctagctttc---------tctcagggtcgaaccagcagagtgctttcgccattgatgttccttc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||||||||||||||| ||||||||| |
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| T |
13224528 |
actactggggtctctaatcccattcgctcccctagctttcgtctctcagtgtcagtgtcggcccagcagagtgctttcgccattggtgttccttc |
13224622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 14465040 - 14465134
Alignment:
| Q |
28 |
actactggggtctctaatcccattcgctcccctagctttc---------tctcagggtcgaaccagcagagtgctttcgccattgatgttccttc |
113 |
Q |
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| T |
14465040 |
actactggggtctctaatcccattcgctcccctagctttcgtctctcagtgtcagtgtcggcccagcagagtgctttcgccattggtgttccttc |
14465134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 38818898 - 38818937
Alignment:
| Q |
28 |
actactggggtctctaatcccattcgctcccctagctttc |
67 |
Q |
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| T |
38818898 |
actactggggtctctaatcccattcgctcccctagctttc |
38818937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 17933954 - 17933915
Alignment:
| Q |
28 |
actactggggtctctaatcccattcgctcccctagctttc |
67 |
Q |
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| T |
17933954 |
actactggggtctcgaatcccattcgctcccctagctttc |
17933915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 15006033 - 15006127
Alignment:
| Q |
28 |
actactggggtctctaatcccattcgctcccctagctttc-tctc--------agggtcgaaccagcagagtgctttcgccattgatgttccttc |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||||||| ||||||||| |
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| T |
15006033 |
actactagggtctctaatcccattcgctcccctagctttcgtctctcagtgttagtgtcggcccagcagagtgctttcgccattggtgttccttc |
15006127 |
T |
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