View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13394_low_3 (Length: 508)

Name: NF13394_low_3
Description: NF13394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13394_low_3
NF13394_low_3
[»] chr6 (21 HSPs)
chr6 (2-490)||(12212884-12213370)
chr6 (2-188)||(12164361-12164547)
chr6 (2-87)||(12179404-12179489)
chr6 (2-87)||(12192485-12192570)
chr6 (1-58)||(12210860-12210917)
chr6 (1-58)||(12164072-12164129)
chr6 (2-58)||(12212833-12212889)
chr6 (77-172)||(12192509-12192604)
chr6 (1-58)||(12163865-12163922)
chr6 (131-204)||(12179491-12179564)
chr6 (1-58)||(12211163-12211220)
chr6 (2-58)||(12210912-12210968)
chr6 (1-58)||(12179250-12179307)
chr6 (1-58)||(12192331-12192388)
chr6 (2-58)||(12211215-12211271)
chr6 (1-57)||(12211316-12211372)
chr6 (259-338)||(12164625-12164704)
chr6 (1-51)||(12163817-12163867)
chr6 (2-58)||(12164124-12164180)
chr6 (1-57)||(12192259-12192315)
chr6 (2-54)||(12192383-12192435)


Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 2 - 490
Target Start/End: Original strand, 12212884 - 12213370
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccaccacattatgtttactcttcccctcctcctccagtctattcccctc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12212884 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccaccacattatgtttactcttcccctcctcctccagtctattcccctc 12212983  T
Q  102 ctccaccacattacatttattcatcaccccctcctccttaccactactagatagtggtttacgatagtatcaaatggtatgcttcttcccatgtacaacc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12212984 ctccaccacattacatttattcatcaccccctcctccttaccactactagatagtggtttacgatagtatcaaatggtatgcttcttcctatgtacaacc 12213083  T
Q  202 cacnnnnnnnncacttcataaataaaacattttaagaaaagtatatacatttatatattatcaactaaacaattaaataagagaaacaaaattatttatt 301  Q
    |||        |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12213084 cacacaaaa--cacttcataaataaaacattttaagacaagtatatacatttatatattatcaactaaacaattaaataagagaaacaaaattagttatt 12213181  T
Q  302 tgagcacttttacataccgacacacgaaactcgttatctaatataagcctcacttacattttctttcctataatctaaattattcaattttttgagatat 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12213182 tgagcacttttacataccgacacacgaaactcgttatctaatataagcctcacttacattttctttcctataatctaaattattcaattttttgagatat 12213281  T
Q  402 ctaaattgtacatacacctgatcaaacagtttataaaacttaatctgagcctatttacattcatattattagtattattaaattagaaa 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12213282 ctaaattgtacatacacctgatcaaacagtttataaaacttaatctgagcctatttacattcatattattagtattattaaattagaaa 12213370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 12164361 - 12164547
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccaccacattatgtttactcttcccctcctcctccagtctattcccctc 101  Q
    |||||||| ||||||||||| || |||||||||||||||  |||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||    
T  12164361 ccaccagtttacaagtataaatctcctcctccacctgttcactcaccacctccaccacactatgtctactcttcacctcctcctccggtctattcccctc 12164460  T
Q  102 ctccaccacattacatttattcatcaccccctcctccttaccactactagatagtggtttacgatagtatcaaatggtatgcttctt 188  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||  ||||||  ||||||| ||||||||  ||||||||||||||    
T  12164461 ctccaccacattacatatattcatcacctcctcctccttaccactcttagataacggtttaccatagtatcccatggtatgcttctt 12164547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 12179404 - 12179489
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccaccacattatgtttactcttcccctcctcctcc 87  Q
    |||||||| |||||||||||||| |||||||| |||| || |||||||||||||||||||||| | |||||||| || ||||||||    
T  12179404 ccaccagtttacaagtataagtctcctcctcctcctgcttactcaccacctccaccacattatatctactcttcaccacctcctcc 12179489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 12192485 - 12192570
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccaccacattatgtttactcttcccctcctcctcc 87  Q
    |||||||| |||||||||||||| |||||||| ||||  | |||||||||||||||||||||| | |||||||| || ||||||||    
T  12192485 ccaccagtttacaagtataagtctcctcctcctcctgcatactcaccacctccaccacattatatctactcttcaccacctcctcc 12192570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12210860 - 12210917
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  12210860 accaccagtttacaagtataagtctcctcctccacctgtttactcaccacctccacca 12210917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12164072 - 12164129
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    ||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  12164072 accaccagtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 12164129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12212833 - 12212889
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    ||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||    
T  12212833 ccaccagtatacaagtataagtctcctcccccacctgtctactcaccacctccacca 12212889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 12192509 - 12192604
Alignment:
Q  77 cctcctcctccagtctattcccctcctccaccacattacatttattcatcaccccctcctccttaccactactagatagtggtttacgatagtatc 172  Q
    ||||||||||| |  || || || |||||||||||||| || || || ||||| ||||||||||||||| |||| || ||||||||||||||||||    
T  12192509 cctcctcctcctgcatactcaccacctccaccacattatatctactcttcaccacctcctccttaccaccactaaatggtggtttacgatagtatc 12192604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12163865 - 12163922
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    ||||||||| |||||||||||||| |||||||||||||| |  |||||||||||||||    
T  12163865 accaccagtttacaagtataagtctcctcctccacctgtctattcaccacctccacca 12163922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 12179491 - 12179564
Alignment:
Q  131 cctcctccttaccactactagatagtggtttacgatagtatcaaatggtatgcttcttcccatgtacaacccac 204  Q
    ||||||||||||||| |||| || ||||||||||||||||||  |  |||| |||||||| |||||||||||||    
T  12179491 cctcctccttaccaccactaaatggtggtttacgatagtatcccaccgtatacttcttcctatgtacaacccac 12179564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12211163 - 12211220
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    ||||||| | |||||||||||||| |||||||||||||| | ||||||||||||||||    
T  12211163 accaccaatttacaagtataagtcacctcctccacctgtctactcaccacctccacca 12211220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12210912 - 12210968
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    |||||||| ||||||||||| || ||||||||||| |||| ||||||||||||||||    
T  12210912 ccaccagtttacaagtataaatctcctcctccaccagtttactcaccacctccacca 12210968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12179250 - 12179307
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    ||||||||| |||||||| |||||||| | |||||| |||| ||||||||||||||||    
T  12179250 accaccagtttacaagtacaagtccccacgtccacccgtttactcaccacctccacca 12179307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12192331 - 12192388
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    ||||||||| |||||||| ||||| || ||||||||||| | ||||||||||||||||    
T  12192331 accaccagtttacaagtacaagtcaccccctccacctgtctactcaccacctccacca 12192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12211215 - 12211271
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    |||||||| ||||||||||| || || ||||||||||| | ||||||||||||||||    
T  12211215 ccaccagtctacaagtataaatcaccccctccacctgtctactcaccacctccacca 12211271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12211316 - 12211372
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacc 57  Q
    ||||||||| ||||| |||||||| ||||| |||||||| | |||||||||||||||    
T  12211316 accaccagtttacaaatataagtcacctcccccacctgtctactcaccacctccacc 12211372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 12164625 - 12164704
Alignment:
Q  259 ttatcaactaaacaattaaataagagaaacaaaattatttatttgagcacttttacataccgacacacgaaactcgttat 338  Q
    |||||||| ||||||||||||||||||| |||||||| | ||||||  | |||||||| || ||||| | || |||||||    
T  12164625 ttatcaacgaaacaattaaataagagaatcaaaattagtgatttgaatagttttacatgccaacacatgcaagtcgttat 12164704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12163817 - 12163867
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacc 51  Q
    ||||||||| |||||||||||||| || ||||||||||| | |||||||||    
T  12163817 accaccagtttacaagtataagtctccccctccacctgtctactcaccacc 12163867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 12164124 - 12164180
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 58  Q
    |||||||| |||||||||||||| ||||||||||| ||    |||||||||||||||    
T  12164124 ccaccagtttacaagtataagtctcctcctccacccgtcaattcaccacctccacca 12164180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12192259 - 12192315
Alignment:
Q  1 accaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacc 57  Q
    ||||||||| ||||||||||| || || || |||||||| | |||||||||||||||    
T  12192259 accaccagtttacaagtataaatcaccacccccacctgtctactcaccacctccacc 12192315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 12192383 - 12192435
Alignment:
Q  2 ccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctcc 54  Q
    |||||||| |||||||| |||||||| |||||||| || | ||||||||||||    
T  12192383 ccaccagtttacaagtacaagtccccacctccacccgtctactcaccacctcc 12192435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University