View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13394_low_6 (Length: 331)
Name: NF13394_low_6
Description: NF13394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13394_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 46587022 - 46587283
Alignment:
| Q |
14 |
aatatcaaatggtatgatgtgtcaaaatgttacaagagaatgggctctactaacttaaaacttaaaggactcataacataacttcaatcttattatctaa |
113 |
Q |
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| T |
46587022 |
aatatcaaatggtatgatgtgtcaaaatgttacaagagaatgggctctactaacttaaaatttaaaggactcatgacataacttcaatcttattatctaa |
46587121 |
T |
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| Q |
114 |
taattccaacattaaccggtgtgttatt-nnnnnnnntcctagtctaataaatttggataaaaattgtttgatccc-----------ttactaaatacta |
201 |
Q |
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| T |
46587122 |
taattccaacattaaccggtgtgttattaaaaaaaaatcctagtctaataaatttggataaaaattgtttgatccctacactatcgtttactaaa---ta |
46587218 |
T |
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| Q |
202 |
gatgtcaattgtataaactataaagcatatttaattaatggtgcagaacttcaagccttaatcca |
266 |
Q |
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| T |
46587219 |
gatgtcaattgtataaactataaagcatatttaattaatggtgcggaacttcaagccttactcca |
46587283 |
T |
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