View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13394_low_7 (Length: 299)
Name: NF13394_low_7
Description: NF13394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13394_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 37922453 - 37922189
Alignment:
| Q |
19 |
atgaactcaacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacg |
118 |
Q |
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| T |
37922453 |
atgaactcaacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgccacacg |
37922354 |
T |
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| Q |
119 |
acacaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttcttacctct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37922353 |
acacaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttcttacctct |
37922254 |
T |
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| Q |
219 |
cttttcaatttttcataggcttgtttattatgattgttttggttatggacatagtgggttcagtg |
283 |
Q |
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| T |
37922253 |
cttttcaatttttcataggcttgtttattatgattgttttggttatggacatagtgggttcagtg |
37922189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 37926035 - 37925842
Alignment:
| Q |
20 |
tgaactcaacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacga |
119 |
Q |
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|||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| | ||| ||| |
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| T |
37926035 |
tgaacttaacgctgatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcga |
37925936 |
T |
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| Q |
120 |
cacaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttctta |
213 |
Q |
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| T |
37925935 |
cacaatcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggttctta |
37925842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 37937719 - 37937562
Alignment:
| Q |
27 |
aacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacgacacaatc |
126 |
Q |
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||||||||||| || || |||||||||||||||||||||||||| || |||||| |||||||||||||||||||| ||||||| | ||| || |||||| |
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| T |
37937719 |
aacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaatc |
37937620 |
T |
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| Q |
127 |
gtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgc |
184 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37937619 |
gttcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgc |
37937562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 26285244 - 26285329
Alignment:
| Q |
123 |
aatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggt |
208 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||| ||||| ||||| |
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| T |
26285244 |
aatcgtgctcatgttattgctcttggtgcttttctttgggctgctgctacttttcttgttgccttctcctccactttctttcaggt |
26285329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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