View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13394_low_9 (Length: 243)
Name: NF13394_low_9
Description: NF13394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13394_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 233
Target Start/End: Original strand, 50712322 - 50712538
Alignment:
| Q |
17 |
agtagctactagacacttagctatacgaccatctgctcccttaggaaagaagccaccaggaacaatttcatatcgaccatacactatcctcaatatttct |
116 |
Q |
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| T |
50712322 |
agtagctactagacacttagctatacgaccatctgctcccttaggaaagaagccaccaggaacaatttcatatcgaccatacactatcctcaatatttct |
50712421 |
T |
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| Q |
117 |
tctggagtccttgaatatgaaactgaatttttgtcaccagcaagtacatttcctgaaactttaccttcagcaccctgtgatatagggacctctagaccct |
216 |
Q |
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| T |
50712422 |
tctggagtccttgaatatgaaagtgaatttttgtcaccagcaagtacatttcctgaaactttaccttcagcaccttgtgatatagggacctctagaccct |
50712521 |
T |
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| Q |
217 |
catcttttacgcctttg |
233 |
Q |
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| T |
50712522 |
catcttttacgcctttg |
50712538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 12783971 - 12783859
Alignment:
| Q |
36 |
gctatacgaccatctgctcccttaggaaagaagccaccaggaacaatttcatatcga---ccatacactatcctcaatatttcttctggagtccttgaat |
132 |
Q |
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| T |
12783971 |
gctatacgaccatctgctcccttagggtagaagccaccagggacactctcattaccacttccatatataatcctcaatatttcttgtggagtccttggat |
12783872 |
T |
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| Q |
133 |
atgaaactgaatt |
145 |
Q |
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| T |
12783871 |
atgatagtgaatt |
12783859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 12772025 - 12771958
Alignment:
| Q |
105 |
ctcaatatttcttctggagtccttgaatatgaaactgaatttttgtcaccagcaagtacatttcctga |
172 |
Q |
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| T |
12772025 |
ctcaatatttcatttggagttcttgaatatgatagtgaatttttatcaccagcaaggatatttcctga |
12771958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 12762618 - 12762584
Alignment:
| Q |
102 |
atcctcaatatttcttctggagtccttgaatatga |
136 |
Q |
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| T |
12762618 |
atcctcaatatttcttgtggagtccttgaatatga |
12762584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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