View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13395_high_1 (Length: 945)

Name: NF13395_high_1
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13395_high_1
NF13395_high_1
[»] chr5 (18 HSPs)
chr5 (17-923)||(19806901-19807807)
chr5 (594-922)||(20111954-20112278)
chr5 (76-260)||(19968690-19968873)
chr5 (600-741)||(1347683-1347824)
chr5 (785-914)||(19653828-19653957)
chr5 (76-245)||(1347021-1347192)
chr5 (625-740)||(19969334-19969449)
chr5 (769-922)||(20049432-20049584)
chr5 (846-921)||(13712165-13712240)
chr5 (782-869)||(27358248-27358335)
chr5 (619-751)||(9619101-9619233)
chr5 (600-724)||(17392615-17392739)
chr5 (626-740)||(19653676-19653790)
chr5 (766-819)||(13712051-13712104)
chr5 (857-919)||(17377359-17377421)
chr5 (857-919)||(17383724-17383786)
chr5 (256-348)||(19653262-19653355)
chr5 (448-493)||(20112381-20112426)
[»] chr2 (1 HSPs)
chr2 (766-922)||(15784653-15784808)
[»] chr6 (2 HSPs)
chr6 (592-923)||(16258173-16258515)
chr6 (445-553)||(16258032-16258134)
[»] scaffold0009 (5 HSPs)
scaffold0009 (857-922)||(40599-40664)
scaffold0009 (765-803)||(40729-40767)
scaffold0009 (857-922)||(33981-34046)
scaffold0009 (765-802)||(34100-34137)
scaffold0009 (765-803)||(21852-21890)
[»] chr3 (7 HSPs)
chr3 (846-923)||(32226555-32226632)
chr3 (755-923)||(32241923-32242095)
chr3 (813-923)||(24912857-24912967)
chr3 (755-804)||(32224567-32224616)
chr3 (315-406)||(32227841-32227932)
chr3 (593-740)||(32241755-32241902)
chr3 (593-659)||(32224399-32224465)
[»] chr1 (1 HSPs)
chr1 (76-154)||(40031335-40031413)


Alignment Details
Target: chr5 (Bit Score: 887; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 887; E-Value: 0
Query Start/End: Original strand, 17 - 923
Target Start/End: Complemental strand, 19807807 - 19806901
Alignment:
Q  17 atgaacaatcgcagtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagttgattc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19807807 atgaacaatcgcagtgataatttaacaccaaaacctttcaaaaatactataacacaaataagtcatggagaaaattgtgctaacactaacaagctgattc 19807708  T
Q  117 aattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatgatttgcaatcacccttgcagtcacatgaaatgcaaataagcg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  19807707 aattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatgatttgcaatcacccttgcagtcacatgaaatgcaaataagtg 19807608  T
Q  217 aaaagtcaagtgacacaatcgatcaagcatttaatgtcataaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaatacctctttgaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19807607 aaaagtcaagtgacacaatcgatcaagcatttaatgtcataaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaataactctttgaa 19807508  T
Q  317 aataaatccaacattcaatgtcacaaatgcaacaagaatggaccaaatatatagcaactacaaattgtcctactcaagcaatttggttacggaaaatgcc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807507 aataaatccaacattcaatgtcacaaatgcaacaagaatggaccaaatatatagcaactacaaattgtcctactcaagcaatttggttacggaaaatgcc 19807408  T
Q  417 aagtgaaacgtacattgtattgtataagaactaacgaaaacaccatgtatacatctaggaactagaaacattcatatcaattaatgatagtttacacgcg 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  19807407 aagtgaaacgtacattgtattgtataagaactaacgaaaacaccatgtatacatctaggaactagaaacatttatatcaattaatgatagtttacacacg 19807308  T
Q  517 ggagagatccttgggaaggatatcaaatcttctaaaagtcgggggctcgccattggattttggaaatctggactatggattgccataacctgtaaaaccc 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807307 ggagagatccttgggaaggatatcaaatcttctaaaagtcgggggctcgccattggattttggaaatctggactatggattgccataacctgtaaaaccc 19807208  T
Q  617 ttgcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgttagattagaggtaacacattcagg 716  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807207 ttgcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgttagattagaggtaacacattcagg 19807108  T
Q  717 aacatgatatgggtgtttccaatcctttgtggttttcaatgaacctatccactgtcaatcagaaacaaaatatgatttgtaaaaatacttgaacataaga 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807107 aacatgatatgggtgtttccaatcctttgtggttttcaatgaacctatccactgtcaatcagaaacaaaatatgatttgtaaaaatacttgaacataaga 19807008  T
Q  817 gaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcact 916  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19807007 gaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcact 19806908  T
Q  917 acctcat 923  Q
    |||||||    
T  19806907 acctcat 19806901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 594 - 922
Target Start/End: Complemental strand, 20112278 - 20111954
Alignment:
Q  594 gattgccataacctgtaaaacccttgcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgtt 693  Q
    ||||| ||||||||||| ||  |||||||| |||||||||||||||||||||||||| |||  ||| | ||||| |||| || | || | |||||||||     
T  20112278 gattgtcataacctgtagaagtcttgcattctgcaaaatatatgttgcaaattgaaaatcatgttcgaaagcttcatagcctacaatgttacatgttgtg 20112179  T
Q  694 agattagaggtaacacattcaggaacatgatatgggtgtttccaatcctttgtggttttcaatgaacctatccactgtcaatcagaaacaaaatatgatt 793  Q
    |||  |||   ||||||||||||||||| |||||||| |||||||| || | | ||| |   |||| | | || ||||||||| ||||||||||| ||||    
T  20112178 agacgagacaaaacacattcaggaacatcatatgggtatttccaattctctttagttgt---tgaatcaaacccctgtcaatcggaaacaaaataggatt 20112082  T
Q  794 tgtaaaaatacttgaacataagagaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgg 893  Q
    |||||||||||||||| | || | |||||| || |||||||| ||||||||  ||||||||||||||||||||||  ||||  ||| | ||| |||||||    
T  20112081 tgtaaaaatacttgaatacaaaa-aagaacaagaaaaaatcagtaactatcctttgatgtgacaaacaaacctttacaattttaagtgcttgaagtttgg 20111983  T
Q  894 gacaattttggagcattttcactacctca 922  Q
    |||| || |||||||||||||||||||||    
T  20111982 gacatttctggagcattttcactacctca 20111954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 76 - 260
Target Start/End: Original strand, 19968690 - 19968873
Alignment:
Q  76 aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatctgaacacagcgacctagaatga 175  Q
    |||||||||||||| || |||  |||| |||||||||||||||||||||  ||||||||||| |||||| |||| |||| ||||||   | |   |||||    
T  19968690 aagtcatggagaaagttatgcgcacacaaacaagttgattcaattacgccgtagcagcaattcaagagtaaaaatatctaaacacaataagcataaatga 19968789  T
Q  176 tttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaaagtcaagtgacacaatcgatcaagcatttaatgtcataaat 260  Q
    ||||||| || ||||| | ||  ||||||||||||| || |||  ||||||||||| || | |||||||||||||||||||||||    
T  19968790 tttgcaagcatccttggattcctatgaaatgcaaatgagtgaagggtcaagtgaca-aaccaatcaagcatttaatgtcataaat 19968873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 600 - 741
Target Start/End: Original strand, 1347683 - 1347824
Alignment:
Q  600 cataacctgtaaaacccttgcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgttagatta 699  Q
    |||||||||||| |   ||||||| | ||| ||||| ||||||||| | || |||||||||| ||||||||||| |  ||| | ||||||||| |||| |    
T  1347683 cataacctgtaacagttttgcattcttcaatatataggttgcaaatcggaaatcagcttccacagcttgatagtgtatgatattacatgttgtaagatga 1347782  T
Q  700 gaggtaacacattcaggaacatgatatgggtgtttccaatcc 741  Q
    |||| |||||||| ||||||||||||||||| | ||||||||    
T  1347783 gaggaaacacattgaggaacatgatatgggtatatccaatcc 1347824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 785 - 914
Target Start/End: Original strand, 19653828 - 19653957
Alignment:
Q  785 aatatgatttgtaaaaatacttgaacataagagaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagttt 884  Q
    |||| |||||||||||| || |||| | ||||||||||| ||||||||  | | |||||| | || |||| |||||||||||||||||||  ||||| ||    
T  19653828 aataggatttgtaaaaagacatgaagaaaagagaagaacaagtaaaaactagtcactatccactgttgtgtcaaacaaacctttttaattttaagagctt 19653927  T
Q  885 ggagtttgggacaattttggagcattttca 914  Q
    | ||||||||||||| ||| ||||||||||    
T  19653928 gaagtttgggacaatattgtagcattttca 19653957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 76 - 245
Target Start/End: Original strand, 1347021 - 1347192
Alignment:
Q  76 aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaa-gatctgaacacagcgacctagaatg 174  Q
    |||||||| |||||||||||   |||||||| || ||| |||||||||   ||| ||||||| ||||||||||| ||||| | | ||  ||||| |||||    
T  1347021 aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg 1347120  T
Q  175 atttgcaatcacccttgcagtcacatgaaatgcaaataagcgaaa-agtcaagtgacacaatcgatcaagca 245  Q
    |||||||| || ||||| ||||||||||||||| ||| |  ||||  |||||||||||||||| ||||||||    
T  1347121 atttgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca 1347192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 625 - 740
Target Start/End: Original strand, 19969334 - 19969449
Alignment:
Q  625 tgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgttagattagaggtaacacattcaggaacatgat 724  Q
    ||||||||||| ||||||||| |||| |||||||||| ||||||||||| |   || | ||||||||| |||| |||   ||||||||| ||||||||||    
T  19969334 tgcaaaatatacgttgcaaatcgaaaatcagcttccacagcttgatagtgtgtaatattacatgttgtaagatgagacaaaacacattcgggaacatgat 19969433  T
Q  725 atgggtgtttccaatc 740  Q
    |||||| |||||||||    
T  19969434 atgggtatttccaatc 19969449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 769 - 922
Target Start/End: Complemental strand, 20049584 - 20049432
Alignment:
Q  769 tgtcaatcagaaacaaaatatgatttgtaaaaatacttgaacataagagaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaaccttt 868  Q
    |||||||| ||||||||| | ||||||||||||||||| || | ||  || || | ||||||| ||||| ||||||  ||||||||||||||||||||||    
T  20049584 tgtcaatccgaaacaaaagaggatttgtaaaaatacttcaaaagaaatgagga-caagtaaaagtcaatcactatcctttgatgtgacaaacaaaccttt 20049486  T
Q  869 ttaattgcaagagtttggagtttgggacaattttggagcattttcactacctca 922  Q
      ||||  ||||| ||  |||||  |||| || |||||||||||||| ||||||    
T  20049485 acaatttgaagagcttcaagttttcgacatttctggagcattttcaccacctca 20049432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 846 - 921
Target Start/End: Original strand, 13712165 - 13712240
Alignment:
Q  846 attgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctc 921  Q
    ||||| |||||||||||||||||  ||||  ||||||||| |||||||||||  |||| |||||||||||||||||    
T  13712165 attgaagtgacaaacaaacctttacaattcgaagagtttgaagtttgggacagctttgtagcattttcactacctc 13712240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 782 - 869
Target Start/End: Original strand, 27358248 - 27358335
Alignment:
Q  782 caaaatatgatttgtaaaaatacttgaacataagagaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaacctttt 869  Q
    ||||||| | |||||||||||||||||  | ||||||| ||| |  ||||| ||||||||||| ||||| ||||||||||||||||||    
T  27358248 caaaatagggtttgtaaaaatacttgattagaagagaataacaaacaaaaaccaataactatcaattgaggtgacaaacaaacctttt 27358335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 619 - 751
Target Start/End: Complemental strand, 9619233 - 9619101
Alignment:
Q  619 gcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgttagattagaggtaacacattcaggaa 718  Q
    ||||| || ||||||||  |||||||| |||| |||| ||||| | || |||||| |   || | ||||||||||| || ||| | ||||||||||||||    
T  9619233 gcattctgaaaaatataccttgcaaatcgaaaatcaggttccacatctagatagtgtaaaatgttacatgttgttaaatgagatgaaacacattcaggaa 9619134  T
Q  719 catgatatgggtgtttccaatcctttgtggttt 751  Q
    |||||| ||||| ||||||||||| | ||||||    
T  9619133 catgatgtgggtatttccaatcctctttggttt 9619101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 724
Target Start/End: Complemental strand, 17392739 - 17392615
Alignment:
Q  600 cataacctgtaaaacccttgcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgttagatta 699  Q
    |||||| |||||||  || ||||| ||||||||||||||||| ||| |||| ||||||||   ||||| |||||||   | |||| || ||||||||| |    
T  17392739 cataacttgtaaaagtctcgcattctgcaaaatatatgttgcgaatcgaaaatcagcttcgcaagcttcatagtctataacttcaaattttgttagatga 17392640  T
Q  700 gaggtaacacattcaggaacatgat 724  Q
    || | ||||||||| ||||||||||    
T  17392639 gacgaaacacattctggaacatgat 17392615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 626 - 740
Target Start/End: Original strand, 19653676 - 19653790
Alignment:
Q  626 gcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgttagattagaggtaacacattcaggaacatgata 725  Q
    ||||||| ||||||| |||  |||| ||||||||   ||||| ||||| ||| |||  ||||||||||||   ||| || |||||||||||||||||| |    
T  19653676 gcaaaatgtatgttgaaaaaagaaaatcagcttcagaagcttcatagttttcaattctacatgttgttaggcgagacgtgacacattcaggaacatgaca 19653775  T
Q  726 tgggtgtttccaatc 740  Q
    ||||| |||||||||    
T  19653776 tgggtatttccaatc 19653790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 766 - 819
Target Start/End: Original strand, 13712051 - 13712104
Alignment:
Q  766 cactgtcaatcagaaacaaaatatgatttgtaaaaatacttgaacataagagaa 819  Q
    |||||||||||||| |||||| ||||||| | ||||||||||||||||| ||||    
T  13712051 cactgtcaatcagagacaaaacatgatttttcaaaatacttgaacataatagaa 13712104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 857 - 919
Target Start/End: Complemental strand, 17377421 - 17377359
Alignment:
Q  857 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacc 919  Q
    ||||||||||||  ||| | ||||||||| |||||||||||||| || |||||||||| ||||    
T  17377421 aaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcaatacc 17377359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 857 - 919
Target Start/End: Complemental strand, 17383786 - 17383724
Alignment:
Q  857 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacc 919  Q
    ||||||||||||  ||| | ||||||||| ||| |||||||||| || |||||||||||||||    
T  17383786 aaacaaacctttagaatggtaagagtttgaagtatgggacaattctgtagcattttcactacc 17383724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 19653262 - 19653355
Alignment:
Q  256 taaatgcgggatttgtgcaaagcaaggtagaccgcaactaaagaggtaatacctc-tttgaaaataaatccaacattcaatgtcacaaatgcaa 348  Q
    |||||| | ||||||||||| | || |||||||||||| ||||||| |||   || ||| |||| |||||||| ||||||||||||| ||||||    
T  19653262 taaatgagtgatttgtgcaacggaatgtagaccgcaaccaaagaggcaatggatctttttaaaacaaatccaatattcaatgtcacagatgcaa 19653355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 493
Target Start/End: Complemental strand, 20112426 - 20112381
Alignment:
Q  448 taacgaaaacaccatgtatacatctaggaactagaaacattcatat 493  Q
    |||| ||||||||| |||||||| ||||| ||||||||||||||||    
T  20112426 taacaaaaacaccaggtatacatataggagctagaaacattcatat 20112381  T

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Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 766 - 922
Target Start/End: Complemental strand, 15784808 - 15784653
Alignment:
Q  766 cactgtcaatcagaaacaaaatatgatttgtaaaaatacttgaacataagagaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaacc 865  Q
    ||||| ||||||||||||||||| |||||| | | || |||||| | |||| ||||||  |||||||  | ||||||||| |||||| |||||||| |||    
T  15784808 cactgccaatcagaaacaaaataggatttgcatatattcttgaaaagaagataagaacatgtaaaaactagtaactatcg-ttgatgcgacaaacagacc 15784710  T
Q  866 tttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctca 922  Q
    |||| ||||  ||||| ||| ||||| |||||||| || ||||||||||||||||||    
T  15784709 ttttcaattctaagagcttgaagttttggacaattctgtagcattttcactacctca 15784653  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 592 - 923
Target Start/End: Original strand, 16258173 - 16258515
Alignment:
Q  592 tggattgccataacctgtaaaacccttgcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttg 691  Q
    |||||| ||||||||||||||   ||||||||| |||||||||||||| ||||| |||| |||||||| || || |||||||||   ||||  |||||||    
T  16258173 tggatttccataacctgtaaatgtcttgcatttcgcaaaatatatgttacaaatcgaaaatcagcttctatggcatgatagtctaaaattttgcatgttg 16258272  T
Q  692 ttagattagaggtaacacattcaggaacatgatatgggtgtttccaatcct---tt---gtggttttcaatgaacctatccactgtcaatcagaaacaaa 785  Q
    ||| ||  || | |||||| ||||||||   |||||||| ||||||||| |   ||    ||||  |  || ||||| |||||||||||||| | |||||    
T  16258273 ttaaatgggatgaaacacactcaggaaccgtatatgggtatttccaatcttcaatttcgttggtagttgataaacctgtccactgtcaatcaaagacaaa 16258372  T
Q  786 atatgatttgtaaaaatactt-----gaacataagagaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaaga 880  Q
    |||  ||| ||||||||||||     ||  | ||| ||||||| |  ||||| ||  ||||||  || || ||||| |||||||||||  ||||| ||||    
T  16258373 atagaattcgtaaaaatacttaaagagactagaagggaagaaccaacaaaaaccatgaactattcatcgacgtgaccaacaaacctttgaaattgaaaga 16258472  T
Q  881 gtttggagtttgggacaattttggagcattttcactacctcat 923  Q
     |||| ||||| |||||||| |||||||||| |||||||||||    
T  16258473 ctttgaagtttcggacaattatggagcatttgcactacctcat 16258515  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 445 - 553
Target Start/End: Original strand, 16258032 - 16258134
Alignment:
Q  445 aactaacgaaaacaccatgtatacatctaggaactagaaacattcatatcaattaatgatagtttacacgcgggagagatccttgggaaggatatcaaat 544  Q
    ||||||| ||||||||| |||| ||||||||||||||||| |||||||| |||    || || ||||| |||||||||||||||||  |||| |  ||||    
T  16258032 aactaacaaaaacaccaggtat-catctaggaactagaaa-attcatataaat----gacaggttacatgcgggagagatccttggataggagaataaat 16258125  T
Q  545 cttctaaaa 553  Q
    |||||||||    
T  16258126 cttctaaaa 16258134  T

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Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 40664 - 40599
Alignment:
Q  857 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctca 922  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||| |||||||    
T  40664 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctca 40599  T

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Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 765 - 803
Target Start/End: Complemental strand, 40767 - 40729
Alignment:
Q  765 ccactgtcaatcagaaacaaaatatgatttgtaaaaata 803  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  40767 ccactgtcaatcagagacaaaatatgatttgtaaaaata 40729  T

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Target: scaffold0009; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 857 - 922
Target Start/End: Complemental strand, 34046 - 33981
Alignment:
Q  857 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctca 922  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||  |||||||||| || |||||||    
T  34046 aaacaaacctttttaatcgaaagagtttgaagtttcggacaatgctggagcatttgcattacctca 33981  T

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Target: scaffold0009; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 765 - 802
Target Start/End: Complemental strand, 34137 - 34100
Alignment:
Q  765 ccactgtcaatcagaaacaaaatatgatttgtaaaaat 802  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34137 ccactgtcaatcagagacaaaatatgatttgtaaaaat 34100  T

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Target: scaffold0009; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 765 - 803
Target Start/End: Complemental strand, 21890 - 21852
Alignment:
Q  765 ccactgtcaatcagaaacaaaatatgatttgtaaaaata 803  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  21890 ccactgtcaatcagagacaaaatatgatttgtcaaaata 21852  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 846 - 923
Target Start/End: Complemental strand, 32226632 - 32226555
Alignment:
Q  846 attgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcat 923  Q
    ||||| ||||| |||||||||||  ||||| ||||||||| |||||||||||||  |||||||||| |||||||||||    
T  32226632 attgacgtgaccaacaaacctttgaaattggaagagtttgaagtttgggacaataatggagcatttgcactacctcat 32226555  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 755 - 923
Target Start/End: Original strand, 32241923 - 32242095
Alignment:
Q  755 atgaacctatccactgtcaatcagaaacaaaatatgatttgtaaaaatactt----gaacataagagaagaacgagtaaaaatcaataactatcgattga 850  Q
    ||||| || |||||||| ||||||| |||||||| |||||||||||||||||     || | || |||||||| |  | ||| ||||||||||  || ||    
T  32241923 atgaatctgtccactgttaatcagagacaaaataggatttgtaaaaatactttaaaaaatagaaaagaagaaccaacataaaccaataactattcatcga 32242022  T
Q  851 tgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcat 923  Q
     ||| | |||||||||||  ||||| ||||||||| || ||||||||||  |||||||||| || ||||||||    
T  32242023 cgtggccaacaaacctttaaaattgaaagagtttgaaggttgggacaataatggagcatttgcagtacctcat 32242095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 813 - 923
Target Start/End: Complemental strand, 24912967 - 24912857
Alignment:
Q  813 aagagaagaacgagtaaaaatcaataactatcgattgatgtgacaaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcatttt 912  Q
    |||||||||||  |||||| | | |||||||  ||  |||||||||||||||||||| ||||   |||||||| |||||||||||||  |  ||||||||    
T  24912967 aagagaagaacatgtaaaatttagtaactatacatgcatgtgacaaacaaaccttttgaatttttagagtttgaagtttgggacaatcctaaagcatttt 24912868  T
Q  913 cactacctcat 923  Q
    |||||||||||    
T  24912867 cactacctcat 24912857  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 755 - 804
Target Start/End: Original strand, 32224567 - 32224616
Alignment:
Q  755 atgaacctatccactgtcaatcagaaacaaaatatgatttgtaaaaatac 804  Q
    |||||||||||||||||||||||||  ||||||| |||| ||||||||||    
T  32224567 atgaacctatccactgtcaatcagaggcaaaataggattcgtaaaaatac 32224616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 406
Target Start/End: Complemental strand, 32227932 - 32227841
Alignment:
Q  315 aaaataaatccaacattcaatgtcacaaatgcaacaagaatggaccaaatatatagcaactacaaattgtcctactcaagcaatttggttac 406  Q
    ||||||||||||| |||| | |||| |||||||| ||  ||||||   ||| |||||| | ||||||||| |||||| ||||||||||||||    
T  32227932 aaaataaatccaatattctaagtcataaatgcaagaactatggacatcatacatagcatccacaaattgttctactcgagcaatttggttac 32227841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 740
Target Start/End: Original strand, 32241755 - 32241902
Alignment:
Q  593 ggattgccataacctgtaaaacccttgcattttgcaaaatatatgttgcaaattgaaagtcagcttccatagcttgatagtcttcgatttcacatgttgt 692  Q
    ||||| ||||||||| |||||  |||||||| ||||||||||||||| ||||| |||| |||  ||| |  || |||||| ||   ||||  ||||||||    
T  32241755 ggatttccataacctttaaaaatcttgcattctgcaaaatatatgttacaaatcgaaaatcattttctaaggcatgatagcctaaaattttgcatgttgt 32241854  T
Q  693 tagattagaggtaacacattcaggaacatgatatgggtgtttccaatc 740  Q
    || ||  || | |||||| ||||||||   ||||||||||||||||||    
T  32241855 taaatgggatgaaacacaatcaggaaccgtatatgggtgtttccaatc 32241902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 593 - 659
Target Start/End: Original strand, 32224399 - 32224465
Alignment:
Q  593 ggattgccataacctgtaaaacccttgcattttgcaaaatatatgttgcaaattgaaagtcagcttc 659  Q
    ||||| ||||||||| | |||  |||||||| ||||||||||||||| ||||| |||| ||||||||    
T  32224399 ggatttccataacctttcaaagtcttgcattctgcaaaatatatgttacaaatcgaaaatcagcttc 32224465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 40031413 - 40031335
Alignment:
Q  76 aagtcatggagaaaattgtgctaacactaacaagttgattcaattacgcattagcagcaattgaagagtcaaaagatct 154  Q
    ||||||||||||| ||| ||| ||||||| |||| ||||||||||||||  ||||||||  | ||||||||||||||||    
T  40031413 aagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaagatct 40031335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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