View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_high_10 (Length: 435)
Name: NF13395_high_10
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_high_10 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 8058871 - 8059278
Alignment:
| Q |
1 |
ttagaagtcttggattttgtttcttacttttgagtaatttgtgactgtgagatgcaactatagtttaatttaatctgccaaatcacatgtgagatgtact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058871 |
ttagaagtcttggattttgtttcttacttttgagtaatttgtgactgtgagatgcaactatagtttaatttaatctgccaaatcacatgtgagatgtact |
8058970 |
T |
|
| Q |
101 |
ctcaatgtttcaaaagatatggagacaataatcttttattagaaattccatgctaaccaattttgtttttcattctactaatgtatctgacatgatactg |
200 |
Q |
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| T |
8058971 |
ctcaatgtttcaaaagatatggagacaataatcttttattagaaattccatgctgaccaattttgtttttcattctactaatgtatctgacatgatactg |
8059070 |
T |
|
| Q |
201 |
tcataattaatnnnnnnnnttgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagaaattgaagtgaatttgatatttc |
300 |
Q |
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| T |
8059071 |
tcataattaataaaaaaaattgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagacattgaagtgaatttgatatttc |
8059170 |
T |
|
| Q |
301 |
attttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtctcatgacagtcatatcctggattcctatggttgcaattatccctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8059171 |
attttcttctctttacaagcctgtgaataagacatatcttgaatcaacattgtctcatgacagtcatatcctggattcctatggttgcaattattcctcc |
8059270 |
T |
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| Q |
401 |
tatatgta |
408 |
Q |
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| T |
8059271 |
tatatgta |
8059278 |
T |
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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 354
Target Start/End: Complemental strand, 10428908 - 10428722
Alignment:
| Q |
162 |
tttgtttttcattctactaatgtatctgacatgatactgtcataattaatnnnnnnnn---ttgagtgatgagaattgagatggtcctactcttctatac |
258 |
Q |
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| T |
10428908 |
tttgtttttcattttactaatgtatccgacatgacactgtcgtaattaataaaaaaaaaaattgagtgatgagaattgagatgctcatactctttcata- |
10428810 |
T |
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| Q |
259 |
aatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtc |
354 |
Q |
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| T |
10428809 |
--------tgtctaaaggacattgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtc |
10428722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 359
Target Start/End: Complemental strand, 34959 - 34767
Alignment:
| Q |
162 |
tttgtttttcattctactaatgtatctgacatgatactgtcataattaat----nnnnnnnnttgagtgatgagaattgagatggtcctactcttctata |
257 |
Q |
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||||||||||||| |||||||||||| ||||||| || ||| |||||||| ||||||||||| ||||||||||||| |||||| |
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| T |
34959 |
tttgtttttcattttactaatgtatccgacatgacacggtcgtaattaataaaaaaaaaaaattgagtgatgataattgagatggtcatactct------ |
34866 |
T |
|
| Q |
258 |
caatgcatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtctca |
357 |
Q |
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| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||| ||||| || |
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| T |
34865 |
---ttcatatgtctaaaggacattgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtccca |
34769 |
T |
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