View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_high_11 (Length: 422)
Name: NF13395_high_11
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 7632355 - 7631966
Alignment:
| Q |
15 |
catcaattgtgattgtacatttgtcagaatgattataataatctagatgacgacggttagaatagatggtcaacttccttaatgtagaaattgcaaaatg |
114 |
Q |
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| T |
7632355 |
catcaattgtgattgtacatttgccggaatgattataataatctagatgacgacggtatgaatagatggtcaacttccttaatgtagaaattgcaaaatg |
7632256 |
T |
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| Q |
115 |
gatatcccttgtattcatccaatgacaattatccaaggtcaactcttgtagaacaggacaccctaagaagagtcgttcaaccgatttctcatttctgaag |
214 |
Q |
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| T |
7632255 |
gatatcccttatattcatccaatgacaattatccaaggtcaactcttgtagaacaggacaccctaagaagagttgttcaaccgatttctcatttctgaag |
7632156 |
T |
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| Q |
215 |
taaacctttgaaactactaatgttttcagaccaggaaaagaaataacactaggaatatctagagcgcgaggaaattttaaatgcagcttgtttaatgtat |
314 |
Q |
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| T |
7632155 |
taaacctttgaaactactaatgttttcagaccaggaaaagaaataccactaggaatatctagagcgcgaggaaattttaaatgcagcttgtttaatgtat |
7632056 |
T |
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| Q |
315 |
gtgatgcagtgaacctattgggtaacacatccgtaccttttagatattttagggaaattttaagatcgtgtaatttatgcttcacaacag |
404 |
Q |
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| T |
7632055 |
gtgatgcagtgaacctattgggtaacacatccgtaccttttagatattttagggaaattttaagatcgtgtactttatgcttcacaacag |
7631966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 7639059 - 7638670
Alignment:
| Q |
15 |
catcaattgtgattgtacatttgtcagaatgattataataatctagatgacgacggttagaatagatggtcaacttccttaatgtagaaattgcaaaatg |
114 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639059 |
catcaattgtgattgtacatttgtcggaatgattattataatctagataacaatggtcagaatagatggtcaacttccttaatgtagaaattgcaaaatg |
7638960 |
T |
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| Q |
115 |
gatatcccttgtattcatccaatgacaattatccaaggtcaactcttgtagaacaggacaccctaagaagagtcgttcaaccgatttctcatttctgaag |
214 |
Q |
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| T |
7638959 |
gatatcccttatattcatccaataacaattatccaaggtcaactcttgtagaacaggacaccctaagaagagtagttcaaccgaattctcatttcaaaag |
7638860 |
T |
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| Q |
215 |
taaacctttgaaactactaatgttttcagaccaggaaaagaaataacactaggaatatctagagcgcgaggaaattttaaatgcagcttgtttaatgtat |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||| | || |||||||| |||||||||||||||||||| || |
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| T |
7638859 |
aaaacatttgaaactactaatgttttcagaccaggaaaacaaataccactaggaatatgtagtgtgcaaggaaattctaaatgcagcttgtttaatgcat |
7638760 |
T |
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| Q |
315 |
gtgatgcagtgaacctattgggtaacacatccgtaccttttagatattttagggaaattttaagatcgtgtaatttatgcttcacaacag |
404 |
Q |
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| T |
7638759 |
atgaggctgtgaacctattgggtaacacatacgtaccttctagatattctacggaaattttaagatcttgtactttgtgcttcacaacag |
7638670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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