View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_high_12 (Length: 401)
Name: NF13395_high_12
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 7632329 - 7631966
Alignment:
| Q |
20 |
gaatgattataataatctagatgacgacggttagaatagatggtcaacttccttaatgtagaaattgcaaaatggatatcccttgtattcatccaatgac |
119 |
Q |
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| T |
7632329 |
gaatgattataataatctagatgacgacggtatgaatagatggtcaacttccttaatgtagaaattgcaaaatggatatcccttatattcatccaatgac |
7632230 |
T |
|
| Q |
120 |
aattatccaaggtcaactcttgtagaacaggacaccctaagaagagtcgttcaaccgatttctcatttctgaagtaaacctttgaaactactaatgtttt |
219 |
Q |
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| T |
7632229 |
aattatccaaggtcaactcttgtagaacaggacaccctaagaagagttgttcaaccgatttctcatttctgaagtaaacctttgaaactactaatgtttt |
7632130 |
T |
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| Q |
220 |
cagaccaggaaaagaaataacactaggaatatctagagcgcgaggaaattttaaatgcagcttgtttaatgtatgtgatgcagtgaacctattgggtaac |
319 |
Q |
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| T |
7632129 |
cagaccaggaaaagaaataccactaggaatatctagagcgcgaggaaattttaaatgcagcttgtttaatgtatgtgatgcagtgaacctattgggtaac |
7632030 |
T |
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| Q |
320 |
acatccgtaccttttagatattttagggaaattttaagatcgtgtaatttatgcttcacaacag |
383 |
Q |
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| T |
7632029 |
acatccgtaccttttagatattttagggaaattttaagatcgtgtactttatgcttcacaacag |
7631966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 7639033 - 7638670
Alignment:
| Q |
20 |
gaatgattataataatctagatgacgacggttagaatagatggtcaacttccttaatgtagaaattgcaaaatggatatcccttgtattcatccaatgac |
119 |
Q |
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| T |
7639033 |
gaatgattattataatctagataacaatggtcagaatagatggtcaacttccttaatgtagaaattgcaaaatggatatcccttatattcatccaataac |
7638934 |
T |
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| Q |
120 |
aattatccaaggtcaactcttgtagaacaggacaccctaagaagagtcgttcaaccgatttctcatttctgaagtaaacctttgaaactactaatgtttt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||| |||| |||||||||||||||||||| |
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| T |
7638933 |
aattatccaaggtcaactcttgtagaacaggacaccctaagaagagtagttcaaccgaattctcatttcaaaagaaaacatttgaaactactaatgtttt |
7638834 |
T |
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| Q |
220 |
cagaccaggaaaagaaataacactaggaatatctagagcgcgaggaaattttaaatgcagcttgtttaatgtatgtgatgcagtgaacctattgggtaac |
319 |
Q |
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||||||||||||| ||||| |||||||||||| ||| | || |||||||| |||||||||||||||||||| || ||| || |||||||||||||||||| |
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| T |
7638833 |
cagaccaggaaaacaaataccactaggaatatgtagtgtgcaaggaaattctaaatgcagcttgtttaatgcatatgaggctgtgaacctattgggtaac |
7638734 |
T |
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| Q |
320 |
acatccgtaccttttagatattttagggaaattttaagatcgtgtaatttatgcttcacaacag |
383 |
Q |
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|||| |||||||| |||||||| || ||||||||||||||| |||| ||| ||||||||||||| |
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| T |
7638733 |
acatacgtaccttctagatattctacggaaattttaagatcttgtactttgtgcttcacaacag |
7638670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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