View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_high_14 (Length: 379)
Name: NF13395_high_14
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_high_14 |
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| [»] scaffold0129 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 46502104 - 46502437
Alignment:
| Q |
21 |
atcataattcatgtctcctcctaaagcagactcctgctttttatgaggaccatgatgataatgataatatatttttgctttctggtgagacgtttgagaa |
120 |
Q |
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| T |
46502104 |
atcataattcaagactcctccttaagcagactccttctttcttcga---ctatgatgatcatgattatttatttttgcttcttggtgagacgtttgagaa |
46502200 |
T |
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| Q |
121 |
ttgcgtcaagttagattggccacctccatttgaagagaactgcgaagatctttctatttttggttctggttctgttgttaatggcatactttgtctctgt |
220 |
Q |
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| T |
46502201 |
tagtgtcaagttagattggccacctccaattgatgtggatcgcgaaggtattttaattg------ctggttctattgttaatggcatactttgtctctgt |
46502294 |
T |
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| Q |
221 |
caaggcaatggaagaggcaaaaccacttggattaatgtgcaaaaattagtattgtggaatctgtatacagaggaattcaaagtcattcctagtggctctt |
320 |
Q |
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| T |
46502295 |
caaggcaatggaagaggtgacaccacttggatt---gcacaaaaagttgtattgtggaacccatctacagaggaattcaaagtcattcctaatggttctt |
46502391 |
T |
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| Q |
321 |
ttgaacgtacaattctcaaagcctttcctcctggctctgtttttga |
366 |
Q |
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| T |
46502392 |
ttgaacatgcaattctgaaagcctttcctcctggcactgtttttga |
46502437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 40843812 - 40843681
Alignment:
| Q |
234 |
gaggcaaaaccacttggattaatgtgcaaaaattagtattgtggaatctgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaat |
333 |
Q |
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| T |
40843812 |
gaggcaacaccacttggatta-tgtgcaaaaattagtattgtggaatccgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaat |
40843714 |
T |
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| Q |
334 |
tctcaaagcctttcctcctggctctgtttttga |
366 |
Q |
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| T |
40843713 |
tctcaaagcctttcctcctggctctgtttttga |
40843681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 4042052 - 4041978
Alignment:
| Q |
82 |
tgataatatatttttgctttctggtgagacgtttgagaattgcgtcaagttagattggccacctccatttgaaga |
156 |
Q |
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| T |
4042052 |
tgataaaatgtttttgctttctggtgatacatttgagaatagcgtcaagttagattggccacctctatttgaaga |
4041978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 48742704 - 48742643
Alignment:
| Q |
95 |
ttgctttctggtgagacgtttgagaattgcgtcaagttagattggccacctccatttgaaga |
156 |
Q |
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| T |
48742704 |
ttgctttctggtgagacgtttgagaataaggtcaaattagattggccacctccatttcaaga |
48742643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 366
Target Start/End: Complemental strand, 4041871 - 4041765
Alignment:
| Q |
260 |
caaaaattagtattgtggaatctgtatacagaggaattcaaagtcattcctagtggctcttttgaacgtacaattctcaaagcctttcctcctggctctg |
359 |
Q |
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| T |
4041871 |
caaaaagttgtattgtggaatccatctacggatgaattcaaggccattcctaatggctcctttgagcacacaattctcaaagcatttccccctggatctg |
4041772 |
T |
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| Q |
360 |
tttttga |
366 |
Q |
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| T |
4041771 |
tttttga |
4041765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 4041953 - 4041915
Alignment:
| Q |
187 |
tggttctgttgttaatggcatactttgtctctgtcaagg |
225 |
Q |
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| T |
4041953 |
tggttccgttgttaatggcatactttgtctttgtcaagg |
4041915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 17883 - 17820
Alignment:
| Q |
94 |
tttgctttctggtgagacgtttgagaattgcgtcaagttagattggccacctccatttgaagag |
157 |
Q |
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| T |
17883 |
tttgctttttggtgagaggtttgagaataaggtcaaattaaattggccacctccatttcaagag |
17820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 34279 - 34216
Alignment:
| Q |
94 |
tttgctttctggtgagacgtttgagaattgcgtcaagttagattggccacctccatttgaagag |
157 |
Q |
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| T |
34279 |
tttgctttttggtgagaggtttgagaataaggtcaaatttgattggccacctccatttcaagag |
34216 |
T |
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