View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_high_17 (Length: 241)
Name: NF13395_high_17
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 34299250 - 34299389
Alignment:
| Q |
1 |
aggacgaatggagatatctgttcacaattctttttatgttaacttgtaatttatttcttaaacagtcgttacctgttgtcggataattataatgattcgt |
100 |
Q |
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| T |
34299250 |
aggacgaatagagatatctgttcacaattctttttatgttaacttgtaatttatttcttaaacagtcgttacctgttgtcggataattataatgattcgt |
34299349 |
T |
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| Q |
101 |
attattatggctggtttatatattgtggcataaggaatat |
140 |
Q |
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| T |
34299350 |
attattatggctggtttatatattgtggcataaggaatat |
34299389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 34303150 - 34303221
Alignment:
| Q |
32 |
ttttatgttaacttgtaatttatttcttaaacagtcgttacctgttgtcggataattataatgattcgtatt |
103 |
Q |
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| T |
34303150 |
ttttatgttaacttgtaatttttttcttaaacaatcgttacctatagtcggataattataatgattcttatt |
34303221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 34299395 - 34299449
Alignment:
| Q |
180 |
gacaattaatatgtacattttttaactagttttaattatttcagtgcgtgttcat |
234 |
Q |
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| T |
34299395 |
gacaattaatatgtacattttttaactagttttatttatttcattgcgtgttcat |
34299449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 34303267 - 34303336
Alignment:
| Q |
163 |
ttgactggtttttatacg-acaattaatatgtacattttttaactagttttaattatttcagtgcgtgtt |
231 |
Q |
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| T |
34303267 |
ttgactagtttttgtacgtataattaatatgtacattttttaaacagttttatttatttcattgcgtgtt |
34303336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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