View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_high_20 (Length: 231)
Name: NF13395_high_20
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 1243959 - 1243760
Alignment:
| Q |
19 |
gaagctggtatgcgagagagatttgtataagctattgaatttaaaactaacgggcattattacaattcttcatagtacttataaataagagaaaaatata |
118 |
Q |
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| T |
1243959 |
gaagctggtatgcgagagagatctgtataagctattgaatttaaaactaacgggcattattacaattcttcatagtacttataaataagagaaaaatata |
1243860 |
T |
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| Q |
119 |
gaaaagtgaaatgaaaatacaccttagattttgagagaattgttacatcaagtaatacattaatacttatgtagctacttagaccaactaactcataact |
218 |
Q |
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| T |
1243859 |
gaaaagtgaaatgaaaatacaccttagattttgagagaattgttacatcaagtaatacattaatacttatgtagctacttagaccaactaactcataact |
1243760 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 43182350 - 43182289
Alignment:
| Q |
76 |
tattacaattcttcatagtacttataaataagagaaaaatatagaaaagtgaaatgaaaata |
137 |
Q |
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| T |
43182350 |
tattacaattcttgatagaactcataattgagagaaaagtatagaaaagtgaaatggaaata |
43182289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 260226 - 260175
Alignment:
| Q |
80 |
acaattcttcatagtacttataaataagagaaaaatatagaaaagtgaaatg |
131 |
Q |
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||||||||| |||| ||| |||| | |||||||||||||||||||||||||| |
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| T |
260226 |
acaattcttgatagaactcataattgagagaaaaatatagaaaagtgaaatg |
260175 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 34878948 - 34878919
Alignment:
| Q |
108 |
agaaaaatatagaaaagtgaaatgaaaata |
137 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34878948 |
agaaaaatatagaaaagtgaaatgaaaata |
34878919 |
T |
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