View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_high_8 (Length: 482)
Name: NF13395_high_8
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 347 - 463
Target Start/End: Original strand, 14175896 - 14176012
Alignment:
| Q |
347 |
gggattttaggctgtatttgtttgaccattgtgttttaaattcgtcagtatcattatgttttggactagttgatagcattgtgtttggtcatgttatgta |
446 |
Q |
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| T |
14175896 |
gggattttaggctgtatttgtttgaccattgtgttttaaatttgtcagtatcattatgttttggactagttgatagcattgtgtttggtcatgttatgta |
14175995 |
T |
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| Q |
447 |
ttttgaaagataactat |
463 |
Q |
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| T |
14175996 |
ttttgaaagataactat |
14176012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 14175581 - 14175672
Alignment:
| Q |
15 |
atcatatttaaaacgatttcattttggtcccgtaaagagcaagaaatttaatttattttcaacgaaacaacttttaatctcatacagttatt |
106 |
Q |
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| T |
14175581 |
atcatatttaaaacgatttcattttggtcccgtaaagagcaagaaatttaatttattttcaacgaaacaacttttaatctcatacagttatt |
14175672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 14175665 - 14175756
Alignment:
| Q |
115 |
cagttatttattttctatttcttcttcnnnnnnncattgaacaatcaaaatcacatagcttgtaca-----tacttttgtctcaagttaattt |
202 |
Q |
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| T |
14175665 |
cagttatttattttctatttcttcttctttttt-cattgaacaatcaaaatcacatagcttctacatacagtacttttgtctcaagttaattt |
14175756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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