View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13395_low_10 (Length: 487)
Name: NF13395_low_10
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 20 - 480
Target Start/End: Original strand, 29243225 - 29243685
Alignment:
| Q |
20 |
actggatcaaaagaaagaatggtcatgcatgatcgcacaaagagaagagcagccataagagaggcctatatcgtcagagatggtgagacaacatgaaatc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243225 |
actggatcaaaagaaagaatggtcatgcatgatcgcacaaagagaagagcagccataagagaggcctatatcgtcagagatggtgagacaacatgaaatc |
29243324 |
T |
|
| Q |
120 |
tatttgggggctaaatttcagtcaatgagtcgaagaaacttgggtatagggttcactcgcgttgaagaagtaattttaggttatttgtattattgttttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243325 |
tatttgggggctaaatttcagtcaatgagtcgaagaaacttgggtatagggttcactcgcgttgaagaagtaattttaggttatttgtattattgttttt |
29243424 |
T |
|
| Q |
220 |
caaaaatttggaagctgatttatattttaacgttcttttataaagtttgagtaaaaagatgattttggttaaagattataaaccagttctcttaataaag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243425 |
caaaaatttggaagctgatttatattttaacgttcttttataaagtttgagtaaaaagatgattttggttaaagattataaaccagttctcttaataaag |
29243524 |
T |
|
| Q |
320 |
tttggtaattgacttttgaaaatttatggttcagttcatgaaccatttaattggtttggtctcttatagttcagtgtggttcattttactcatatagttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243525 |
tttggtaattgacttttgaaaatttatggttcagttcatgaaccatttaattggtttggtctcttatagttcagtgtggttcattttactcatatagttc |
29243624 |
T |
|
| Q |
420 |
attgaattagtatatttcgctcacccggacttcaatctatatttatacccctcctttgctt |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29243625 |
attgaattagtatatttcgctcacccggacttcaatctatatttatacccctcctttgctt |
29243685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 51554746 - 51554684
Alignment:
| Q |
346 |
tggttcagttcatgaaccatttaattggtttgg-tctcttatagttcagtgtggttcatttta |
407 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||||| |||| |
|
|
| T |
51554746 |
tggttcagttcatgaaccatttaatatatttggttcttttatggttcagtgtggttcaattta |
51554684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University