View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_low_12 (Length: 461)
Name: NF13395_low_12
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 125 - 461
Target Start/End: Complemental strand, 23145474 - 23145139
Alignment:
| Q |
125 |
gagacgatgatcccaaatcgccactcagttccgcctccactcccatacactccaccggatgcaacagccacggatttaaagagaaaataaaacttttaca |
224 |
Q |
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| T |
23145474 |
gagacgatgatcccaaatcgccactcagttccacctccactcccatacactccaccggatgaaacagccacggatttaaagagaaaataaaacttttaca |
23145375 |
T |
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| Q |
225 |
ccttgattgaataactcgatgaaaagatttttgcttccttcaccannnnnnncccaattaaacccatcttgatcgaaaatcctggcattcctggcattcc |
324 |
Q |
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| T |
23145374 |
ccttgattgaataactcgatgaaaagatttttgcttccttcactacttttt-cccaattaaacccatcttgatcgaaaatcatggcattattggctttcc |
23145276 |
T |
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| Q |
325 |
aaattgtagatatatttgctcaacaaattaagcctaatatatccttcaccttcttagtacttatcaccagccctttcaactgtttaaggtcattaaaacc |
424 |
Q |
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| T |
23145275 |
agattatagatatatttgcgcaacaaattaagcctaatatatccttcaccttcttagtacttaacaccagccctttcaactgtttaaggtcatcaaaacc |
23145176 |
T |
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| Q |
425 |
tccataaaaaatggcagtttggatcccacgccatttc |
461 |
Q |
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| T |
23145175 |
tccataaaaaatggcagtttggatcccacgccatttc |
23145139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 23145563 - 23145461
Alignment:
| Q |
6 |
cacagaggtatcgcagtagagacaaaacagatacagaaaaactcctaaagcctgtgcagaaagcataatacaaaagaagcaagaaacaagagacgatgat |
105 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23145563 |
cacagaggtatagcagtagagagaaaacagatacagaaaaactcctaaagcctgtgcagaaagcataatacaaaagaagcaggaaacaagagacgatgat |
23145464 |
T |
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| Q |
106 |
ccc |
108 |
Q |
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||| |
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| T |
23145463 |
ccc |
23145461 |
T |
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