View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13395_low_13 (Length: 439)
Name: NF13395_low_13
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 303
Target Start/End: Original strand, 1792051 - 1792324
Alignment:
| Q |
30 |
caattctctagggaaaaggcattaatgggcctattaaaaccctgctcaacataattctaaaattatgaaaatataatttctcaattcaccctcttatatg |
129 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
1792051 |
caattctctaaggaaaaggcatcaatgggcctattaaaaccctgctcaacataattctaaaattataaaaatataatttctcaattcacccccttatatg |
1792150 |
T |
|
| Q |
130 |
ctcataggccctcaaaatacactatcgaatggatcctttcgatattatttcggctaaaatatattattgaaaggacctttcgatagctaatggggtcgca |
229 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1792151 |
ctcataggcccccaaaatacactatcggaaggatcctttcgatattatttcggataaaatacattattgaaaggacctttcgatagctaatggggtcata |
1792250 |
T |
|
| Q |
230 |
caggcagattgagaaattatcacaaaagaactatatgattagttttttgtattagcaaattttctagggacaaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1792251 |
caggcagattgagaaattatcacaaaagaactatatgattagttttttgtattagcaaattttctagggacaaa |
1792324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University