View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_low_16 (Length: 413)
Name: NF13395_low_16
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 47333326 - 47333732
Alignment:
| Q |
1 |
attgatgctccaagtttggatattattggttgtcctaagatattgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatg |
100 |
Q |
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| T |
47333326 |
attgatgctccaagtttggatattattggttgtcctaagatattgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatg |
47333425 |
T |
|
| Q |
101 |
ctgttaagaaaagtggttggaaaggtgatgtggaacttgttcatgttgaaggtgaagaacattgttttcagatttatcatcctgaaactcagaattctat |
200 |
Q |
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| T |
47333426 |
ctgttaagaaaagtggttggaaaggtgatgtggaacttgttcatgttgaaggtgaagaacattgttttcagatttatcatcctgaaactcagagttctat |
47333525 |
T |
|
| Q |
201 |
tgatatggtcaaacgtattgcttcttttcttgtttgatttgaagagggtcattaggtaattttattgttgatttttgtaataaattggagatggggttgc |
300 |
Q |
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| T |
47333526 |
tgatatggtcaaacgtattgcttcttttcttgtttgatttgaagagggtcattaggtaattttattgttgatttttgtaataaattggagatggggttgc |
47333625 |
T |
|
| Q |
301 |
tgaattcatgatcaattttaattatcctgttttgtttat---ggatattcaattcaatgaa--tcatatttttcttttatactgcaatcacgacaatcat |
395 |
Q |
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| T |
47333626 |
tgaattcatgatcaattttaattatcctgttttgtttatatgggatattcaattcaatgaatttcatatttgtcttttatactgcaatcacgacaatcat |
47333725 |
T |
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| Q |
396 |
gatattg |
402 |
Q |
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| T |
47333726 |
gatattg |
47333732 |
T |
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