View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_low_18 (Length: 383)
Name: NF13395_low_18
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 31646567 - 31646938
Alignment:
| Q |
1 |
tatattcatgatcatgaatatatatatgaagttgatattggtgtgcactttttggttttgatgatacagttcaaatgttgaagaagggggtgagacagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31646567 |
tatattcatgatcatgaatatatatatgaagttgatattggtgtgcactttttggttttgatgatacaattcaaatgttgaagaagggggtgagacagtg |
31646666 |
T |
|
| Q |
101 |
tttccatttgctgagggaaattttagctctgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatg |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31646667 |
tttccatttgctgagggaaattttagctctgtgccttggtggaatgagctttcggattgtggaaaaaaaggactttcaattaagccaaagatgggtgatg |
31646766 |
T |
|
| Q |
201 |
cattacttttctggagtatgaagccagatggaactttagatccactgagtatgcatggttagtatctcttttattatcatttttattttattggcaaatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31646767 |
cattacttttctggagtatgaagccagatggaactttagatccactgagtatgcatggttagtatctcttttattatcatttttattttattgacaaatg |
31646866 |
T |
|
| Q |
301 |
ttagggttatgttagtttctatagtttgaaccctaaaactctagatttacactcgtatatgtgcgtgatgat |
372 |
Q |
| |
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| T |
31646867 |
ttagggttatgttagtttctatagtttgaaccctaaaactctagatttacactcgtatatgtgcgttatgat |
31646938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 31637879 - 31638134
Alignment:
| Q |
20 |
atatatatgaagttgatattggtgtgcac--tttttgg-ttttgatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagg |
116 |
Q |
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||||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
31637879 |
atatatatgaagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagg |
31637978 |
T |
|
| Q |
117 |
gaaattttagctctgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggag |
216 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||||||||| | |
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| T |
31637979 |
gaaattttagctctgtgccttggtggaatgagctttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctgggg |
31638078 |
T |
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| Q |
217 |
tatgaagccagatggaactttagatccactgagtatgcatggttagtatctctttt |
272 |
Q |
| |
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|||||||| |||| ||| |||||||| ||||| | ||||||||||| ||||||| |
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| T |
31638079 |
catgaagcctgatgcaaccgtagatccattgagtgttcatggttagtaactctttt |
31638134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 31 - 263
Target Start/End: Original strand, 31630570 - 31630803
Alignment:
| Q |
31 |
gttgatattggtgtgcactttttggtt-ttgatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaattttagctc |
129 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||| ||| |||| ||| ||||||| |
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| T |
31630570 |
gttgatattggtgtccactttttgtaaattgattatacagttcagatgttgaagaagggggtgagacagtgttcccagctgccaaggggaatattagctc |
31630669 |
T |
|
| Q |
130 |
tgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggagtatgaagccagat |
229 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
31630670 |
tgtgccttggtggaatgagctttcggattgtggaaaaaaaggactttcaattaagccaaagatgggtgatgcattacttttttggagcatgaagccagat |
31630769 |
T |
|
| Q |
230 |
ggaactttagatccactgagtatgcatggttagt |
263 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| |
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| T |
31630770 |
ggaactttagatccatcgagtttgcatggttagt |
31630803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 24 - 244
Target Start/End: Original strand, 31652098 - 31652321
Alignment:
| Q |
24 |
atatgaagttgatattggtgtgcactttttg-gt--tttgatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaa |
120 |
Q |
| |
|
|||||||||||||||||| || |||||||| || || |||||||||||||| |||| ||||||||||||||||| ||||||||| ||| ||||||| |
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| T |
31652098 |
atatgaagttgatattggagttcactttttttgtaattcgatgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaagggaaa |
31652197 |
T |
|
| Q |
121 |
ttttagctctgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggagtatg |
220 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||| ||| |
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| T |
31652198 |
ttttagctctgtgccttggtggaatgagctttccgattgtggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagcatg |
31652297 |
T |
|
| Q |
221 |
aagccagatggaactttagatcca |
244 |
Q |
| |
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||||| |||| ||||||||||||| |
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| T |
31652298 |
aagcctgatgcaactttagatcca |
31652321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 244
Target Start/End: Original strand, 31656904 - 31657125
Alignment:
| Q |
28 |
gaagttgatattggtgtgcactttttggtttt-----gatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaatt |
122 |
Q |
| |
|
||||||||||||||||| |||||||| || | ||| ||||||||| |||||||||||||||||||||| ||||| ||| ||| ||||||||| |
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| T |
31656904 |
gaagttgatattggtgttcactttttttttgtaattcgataatacagttcggatgttgaagaagggggtgagacggtgttcccaaatgccaagggaaatt |
31657003 |
T |
|
| Q |
123 |
ttagctctgtgtcttggtggaatgagctttcggattgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggagtatgaa |
222 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
31657004 |
ttagctctgtgccttggtggaatgagctttccgattgtggaaaaggaggactgtcaattaagccaaagatgggtaatgctatacttttctggagcatgaa |
31657103 |
T |
|
| Q |
223 |
gccagatggaactttagatcca |
244 |
Q |
| |
|
||| |||| ||||||||||||| |
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| T |
31657104 |
gcctgatgcaactttagatcca |
31657125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 56 - 271
Target Start/End: Complemental strand, 9104934 - 9104719
Alignment:
| Q |
56 |
ttttgatgatacagttcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaattttagctctgtgtcttggtggaatgagctttcgg |
155 |
Q |
| |
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|||| |||||||||| || |||||||||||||||||||||||||||| || |||| |||| ||||| || |||| | |||| ||||||||||| | |
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|
| T |
9104934 |
ttttaatgatacagtacagatgttgaagaagggggtgagacagtgttccctgctgctaaggggaatttcagtaatgtgccgtggtataatgagctttctg |
9104835 |
T |
|
| Q |
156 |
attgtggnnnnnnnggactttcaattaagccaaagatgggtgatgcattacttttctggagtatgaagccagatggaactttagatccactgagtatgca |
255 |
Q |
| |
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||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||| |||||||||| || || |||| |
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| T |
9104834 |
attgtgggaaaaaaggactttcaattaagccaaagagaggtgatgctttacttttctggagcatgaagccggatgcaactttagatgcatcaagcttgca |
9104735 |
T |
|
| Q |
256 |
tggttagtatctcttt |
271 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
9104734 |
tggttagtttctcttt |
9104719 |
T |
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