View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13395_low_20 (Length: 378)

Name: NF13395_low_20
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13395_low_20
NF13395_low_20
[»] chr4 (3 HSPs)
chr4 (110-366)||(16668288-16668544)
chr4 (111-371)||(36575061-36575321)
chr4 (41-110)||(14032493-14032562)
[»] chr1 (5 HSPs)
chr1 (264-371)||(44516594-44516701)
chr1 (110-198)||(44516709-44516797)
chr1 (41-110)||(32175873-32175942)
chr1 (41-110)||(9371727-9371796)
chr1 (110-160)||(8017764-8017814)
[»] chr2 (2 HSPs)
chr2 (21-110)||(31120373-31120462)
chr2 (44-110)||(15587970-15588036)
[»] chr6 (3 HSPs)
chr6 (110-160)||(21133709-21133759)
chr6 (22-110)||(18617166-18617257)
chr6 (41-110)||(31474018-31474087)
[»] chr7 (2 HSPs)
chr7 (41-110)||(15678681-15678750)
chr7 (58-110)||(10699381-10699433)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 110 - 366
Target Start/End: Complemental strand, 16668544 - 16668288
Alignment:
Q  110 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaatgtccgactta 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||| |||    
T  16668544 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagatggtatttcctattctgttttccatttgattcaaaatgtccgattta 16668445  T
Q  210 accctccacaatttgtcaaactactatcaactctagatgactgtgcatggcatattccccactcccttttccatttccattgtgcactcgtttcttcttg 309  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||    
T  16668444 accctccataatttgtcaaactactatcaactctaggcgactgtgcatggcatattccccactcccttttccagttccactgtgcacccgtttctccttg 16668345  T
Q  310 ttctaccatattgttttaggctttgattttttacttccacacttatagtctttcttc 366  Q
    |||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  16668344 ttctgccgtattgttttaggctttgatttttgacttccacgcttatagtctttcttc 16668288  T

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Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 111 - 371
Target Start/End: Original strand, 36575061 - 36575321
Alignment:
Q  111 ggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaatgtccgacttaa 210  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||    
T  36575061 ggaaaatgttgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcattttctattccgttttccatttcacccaaaatgtccgatttaa 36575160  T
Q  211 ccctccacaatttgtcaaactactatcaactctagatgactgtgcatggcatattccccactcccttttccatttccattgtgcactcgtttcttcttgt 310  Q
    ||||||| ||| | |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  36575161 ccctccataatgtttcaaactactatcaactctagacgactctgcatggcatattccccactcccttttccatttccactgtgcactcgtttctccttgt 36575260  T
Q  311 tctaccatattgttttaggctttgattttttacttccacacttatagtctttcttcatctc 371  Q
    |||  | ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  36575261 tctggcgtattgttttaggctttgattttttaattccacacctatagtctttcttcttctc 36575321  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 14032493 - 14032562
Alignment:
Q  41 gacatctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    |||||| |||||||| || ||||||||||||  || | |||||||| |||||| ||||||||||||||||    
T  14032493 gacatcccaactatgctggcaccccaaaatattgtgtgtcaaatacacctcatcctatatattattaata 14032562  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 44516701 - 44516594
Alignment:
Q  264 ttccccactcccttttccatttccattgtgcactcgtttcttcttgttctaccatattgttttaggctttgattttttacttccacacttatagtctttc 363  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44516701 ttccccactcccttttccatttccattgtgcactcgtttctccttgttctaccatattgttttaggctttgattttttacttccacacttatagtctttc 44516602  T
Q  364 ttcatctc 371  Q
    ||| ||||    
T  44516601 ttcttctc 44516594  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 44516797 - 44516709
Alignment:
Q  110 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44516797 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaa 44516709  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 32175873 - 32175942
Alignment:
Q  41 gacatctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    |||||| || ||||| |||||||||||||||  || | |||||||| |||||||||||||||||||||||    
T  32175873 gacatcccagctatgctgacaccccaaaatattgtttgtcaaatacacctcattctatatattattaata 32175942  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 9371727 - 9371796
Alignment:
Q  41 gacatctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    |||||| |||||||| |  |||||||||||| ||| | |||||||| |||||| ||||||||||||||||    
T  9371727 gacatcccaactatgctagcaccccaaaatatcgtgtgtcaaatacacctcatcctatatattattaata 9371796  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 160
Target Start/End: Complemental strand, 8017814 - 8017764
Alignment:
Q  110 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatga 160  Q
    ||||||||| ||||   |||||||||||||||||| |||||||||||||||    
T  8017814 aggaaaatgttgaacgacacgagagaattctcgtgtgtatcccgcgaatga 8017764  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 31120462 - 31120373
Alignment:
Q  21 tacatgcattagttatggcggacatctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||||||||| | |||||||| |||||| ||||||||||||||||    
T  31120462 tacatgcattagttatggcggacatctcaactatgttgacacttctaaataccgtgtgtcaaatacccctcatcctatatattattaata 31120373  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 15588036 - 15587970
Alignment:
Q  44 atctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    |||||||||||||||||||| ||||| | | | |||||||| | |||||| ||||||||||||||||    
T  15588036 atctcaactatgttgacaccacaaaacatcatgtatcaaatgcacctcatcctatatattattaata 15587970  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 21133709 - 21133759
Alignment:
Q  110 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatga 160  Q
    ||||||||||||||   |||||||||||||||||| |||||||||||||||    
T  21133709 aggaaaatgctgaacgacacgagagaattctcgtgtgtatcccgcgaatga 21133759  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 18617257 - 18617166
Alignment:
Q  22 acatgcattagttatggcgg---acatctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    |||||||||||||||||| |   ||||| ||  ||||||| ||||||||||||  || | |||||||| |||||| ||||||||||||||||    
T  18617257 acatgcattagttatggcagttgacatcccagttatgttggcaccccaaaatattgtgtgtcaaatacacctcatcctatatattattaata 18617166  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 31474018 - 31474087
Alignment:
Q  41 gacatctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    |||||| || ||||| || ||||||||||||  || | |||||||| |||||| ||||||||||||||||    
T  31474018 gacatcccagctatgctggcaccccaaaatattgtgtgtcaaatacacctcatcctatatattattaata 31474087  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 15678681 - 15678750
Alignment:
Q  41 gacatctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    |||||| || ||||| || ||||||||||||  || | |||||||| |||||| ||||||||||||||||    
T  15678681 gacatcccagctatgctggcaccccaaaatattgtgtgtcaaatacacctcatcctatatattattaata 15678750  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 10699433 - 10699381
Alignment:
Q  58 gacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 110  Q
    ||||||||||||||  || | |||||||| |||||| ||||||||||||||||    
T  10699433 gacaccccaaaatattgtgtgtcaaatacacctcatcctatatattattaata 10699381  T

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