View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13395_low_22 (Length: 356)
Name: NF13395_low_22
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 41351634 - 41351962
Alignment:
| Q |
18 |
gacaatatctccgaggtaatttgaatcctcctgtcctcgtgcacacatacacaccaaattcttgtgttttgcaattgaatttgaatttttgtgatgctat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41351634 |
gacaatatctccgaggtaatttgaatcctcctgtcctcgtgcacacatacacaccaaattcttgtgttttgcaattgaatttgaatttttgtgatgctat |
41351733 |
T |
|
| Q |
118 |
ctgaatttatcatttgtttcaatcaaaggctgaaagatgattatttggccaagtttaaaatttgcattataaatgtgatccaaaaaagaaatagcattct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41351734 |
ctgaatttatcatttgtttcaatcaaaggctgaaagatgattatttggccaagtttaaaatttgcattataaatgtgatccaaaaaagaaatagcattct |
41351833 |
T |
|
| Q |
218 |
cattgtggaatatgatattatgcaggttagtgagtcagaattatgttgcatctgctttgagcaggtatgcacaattgaagttcagaattgtggtcaccaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41351834 |
cattgtggaatatgatattatgcaggttagtgagtcagaattatgttgcatctgctttgagcaggtatgcacaattgaagttcagaattgtggtcaccaa |
41351933 |
T |
|
| Q |
318 |
atgtgtgcacaatgcacattagccctttg |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41351934 |
atgtgtgcacaatgcacattagccctttg |
41351962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 36228854 - 36228910
Alignment:
| Q |
99 |
tgaatttttgtgatgctatctgaatttatcatttgtttcaatcaaaggctgaaagat |
155 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
36228854 |
tgaatttttgtgatgctatctaaatttatcatttgtttcgatcaaaggctgagagat |
36228910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 335
Target Start/End: Original strand, 23714846 - 23714941
Alignment:
| Q |
240 |
caggttagtgagtcagaattatgttgcatctgctttgagcaggtatgcacaattgaagttcagaattgtggtcaccaaatgtgtgcacaatgcaca |
335 |
Q |
| |
|
|||||||| ||| | |||||||| |||||||||||||||||||| || |||||||| || || | ||||| ||||| |||||||||||||||||| |
|
|
| T |
23714846 |
caggttagcgagacggaattatgctgcatctgctttgagcaggtgtgtacaattgaggtccaagactgtggccaccagatgtgtgcacaatgcaca |
23714941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University