View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_low_28 (Length: 238)
Name: NF13395_low_28
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 30092547 - 30092774
Alignment:
| Q |
1 |
tttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaatagaagccaaagagaaattatgagaagaagtgaaaacataaagtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30092547 |
tttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaatagaagccaaagagaaattatgagaagaagtgaaaacataaagtta |
30092646 |
T |
|
| Q |
101 |
ggctccattggttatttttgcaactaaacaaagaaatgttgttttggctattgattcctcttacatgtgattatataggatttttagagaatatcaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30092647 |
ggctccattggttatttttgcaactaaacaaagaaatgttgttttggctattgattcctcttacatgtgattatataggatttttagagaatatcaatga |
30092746 |
T |
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| Q |
201 |
tgtagacattcataaattatttgatgat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
30092747 |
tgtagacattcataaattatttgatgat |
30092774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 30088586 - 30088804
Alignment:
| Q |
1 |
tttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaatagaagccaaagagaaattatgagaagaagtgaaaacataaagtta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30088586 |
tttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaatagaagccaaagagaaattatgagaagaagtgaaaactcaaagtta |
30088685 |
T |
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| Q |
101 |
ggctccattggttatttttgcaactaaacaaagaaatgttgttttggctattgattcctctta-catgtgattatataggatttttagagaatatcaatg |
199 |
Q |
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|||||||||| |||||||||| | ||||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||||||| |||| |
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| T |
30088686 |
ggctccattgattatttttgccaataaacaaagaaatgttgttttggctcttgattcctcttatcatgcgattctataggatttttagagaatataaatg |
30088785 |
T |
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| Q |
200 |
atgtagacattcataaatt |
218 |
Q |
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|||| |||||||| |||| |
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| T |
30088786 |
atgttaacattcatgaatt |
30088804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 30098328 - 30098146
Alignment:
| Q |
1 |
tttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaatagaagccaaagagaaattatgagaagaagtgaaaacataaagtta |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |
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| T |
30098328 |
tttgttcatatggattatatatgtggaagtctcagcattgctatgaaaggttaatagaaaccaaagagaaattatgagaagaagtgaaaacacattgtta |
30098229 |
T |
|
| Q |
101 |
ggctccattg--gttatttttgcaactaaacaaagaaatgttgttttggctattgattcctctta-catgtgattatatagga |
180 |
Q |
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|||||||||| || |||||||| |||||||||||||| | |||| ||| |||||| || ||| ||||||| ||||||||| |
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| T |
30098228 |
ggctccattgattttttttttgcatgtaaacaaagaaatggtttttttgctcttgatttctattatcatgtgactatatagga |
30098146 |
T |
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