View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13395_low_3 (Length: 728)

Name: NF13395_low_3
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13395_low_3
NF13395_low_3
[»] chr7 (11 HSPs)
chr7 (19-515)||(3310563-3311059)
chr7 (127-515)||(3312357-3312760)
chr7 (599-722)||(3312844-3312967)
chr7 (630-722)||(3311155-3311247)
chr7 (635-711)||(32945551-32945627)
chr7 (428-487)||(13695881-13695940)
chr7 (599-711)||(11508485-11508596)
chr7 (639-711)||(18147409-18147481)
chr7 (642-702)||(34707315-34707375)
chr7 (428-487)||(13696089-13696148)
chr7 (599-641)||(34707313-34707355)
[»] chr5 (3 HSPs)
chr5 (599-709)||(21143709-21143818)
chr5 (635-711)||(26658785-26658861)
chr5 (635-711)||(26930374-26930450)
[»] scaffold0505 (1 HSPs)
scaffold0505 (293-396)||(4680-4785)
[»] scaffold0005 (3 HSPs)
scaffold0005 (397-487)||(171454-171543)
scaffold0005 (636-709)||(171222-171295)
scaffold0005 (260-359)||(171590-171689)
[»] chr4 (8 HSPs)
chr4 (397-487)||(14645747-14645836)
chr4 (599-713)||(25126009-25126121)
chr4 (599-711)||(13884066-13884177)
chr4 (600-655)||(18873786-18873841)
chr4 (636-709)||(14645995-14646068)
chr4 (260-359)||(14645602-14645701)
chr4 (431-481)||(23974153-23974203)
chr4 (264-396)||(25126341-25126474)
[»] chr3 (5 HSPs)
chr3 (398-466)||(3593068-3593138)
chr3 (397-515)||(18534395-18534519)
chr3 (599-705)||(18705304-18705409)
chr3 (599-711)||(9733400-9733510)
chr3 (325-377)||(32657326-32657378)
[»] chr1 (4 HSPs)
chr1 (642-711)||(12484073-12484142)
chr1 (599-713)||(12786445-12786558)
chr1 (599-711)||(9131456-9131567)
chr1 (599-628)||(12484115-12484144)
[»] chr6 (5 HSPs)
chr6 (599-711)||(19893077-19893188)
chr6 (663-713)||(9548991-9549041)
chr6 (635-699)||(19565029-19565093)
chr6 (601-640)||(19565047-19565086)
chr6 (599-699)||(19566674-19566774)
[»] scaffold0019 (1 HSPs)
scaffold0019 (600-655)||(183153-183208)
[»] chr8 (3 HSPs)
chr8 (599-711)||(40391581-40391692)
chr8 (599-711)||(42147626-42147738)
chr8 (325-402)||(40391288-40391367)
[»] chr2 (5 HSPs)
chr2 (639-713)||(20263481-20263555)
chr2 (430-487)||(15266921-15266978)
chr2 (600-711)||(32623376-32623486)
chr2 (256-357)||(20180784-20180886)
chr2 (641-713)||(27386728-27386800)
[»] scaffold0281 (1 HSPs)
scaffold0281 (395-478)||(1837-1922)
[»] scaffold0094 (1 HSPs)
scaffold0094 (428-468)||(48282-48322)
[»] scaffold0088 (1 HSPs)
scaffold0088 (428-481)||(35502-35556)


Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Original strand, 3310563 - 3311059
Alignment:
Q  19 ccattaaccaaatattcatggaacaacataattcatggttcttataaaattaattatacaaacacttgcaaaacccatatgacaatcacagtataaatag 118  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3310563 ccattaaccaaatattcatggaacagcataattcatggttcttataaaattaattatacaaacacttgcaaaacccatatgacaatcacagtataaatag 3310662  T
Q  119 ctacatgtttctttcaaaagggataacaacatcgattgaatcaatattcaatttcacaagcataataaaaaacaatgtcgtactgcttgaaaaacacggt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  3310663 ctacatgtttctttcaaaagggataacaacatcgattgaatcaaaattcaatttcacaagcataatcaaaaacaatgtcgtactgcttgaaaaacacgtt 3310762  T
Q  219 gacttttataacaaaataaacaacgtaaccacgattaaatcacgaatttaggacctaaaaataatgaattcaacgacaataatatacctaaaatcaaagc 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |  ||||||||||||||||||||||||||| |    
T  3310763 gacttttataacaaaataaacaacgtaaccacaattaaatcacgaatttaggacgtaaaaataatgattcaaacgacaataatatacctaaaatcaaaac 3310862  T
Q  319 agcaactagagcacaaatttaacataaattcattaaaaaatactgaaaacaaggaagaaaaacacaaacccctcactattcatacaacccttatatgaat 418  Q
    ||||| ||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  3310863 agcaattagagcataaatttaacataaattcattaaaagatcgtgaaaacaaggaagaaaaacacaaaccc-------ttcatacaacccttatatgaat 3310955  T
Q  419 agagattctcccttacctctagtttgccgaattgatgacttcctacggtttaatctctctctaatctct-------gtctcctttgcctattttctccac 511  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||       ||||||||||||||||||||||||    
T  3310956 agagactcccccttacctctagtttgtcgaattgatgacttcctactgttgaatctctctctgatctcttatctcggtctcctttgcctattttctccac 3311055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 127 - 515
Target Start/End: Original strand, 3312357 - 3312760
Alignment:
Q  127 ttctttcaaaagggataacaacatcgattgaatcaatattcaatttcacaagcataataaaaaacaatgtcgtactgcttgaaaaacacggtgactttta 226  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3312357 ttctttcaaaagggataacaacatcaattgaatcaaaattcaatttcacaagcataatcaaaaacaatgtcgtactgcttgaaaaacacggtgactttta 3312456  T
Q  227 taacaaaataaacaacgtaaccacgattaaatcacgaatttaggacctaaaaataatgaattcaacgacaataatatacctaaaatcaaagcagcaacta 326  Q
    |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3312457 taacaaaataaacaacgtaaccacaactaaatcacgaatttaagacctaaaaataatgaattcaacgacaataatatacctaaaatcaaagcagcaatta 3312556  T
Q  327 gagcacaaatttaacataaattcattaaaaaatactgaaaacaaggaagaaaaacacaaacccctcac--------tattcatacaacccttatatgaat 418  Q
    |||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||||||| ||||        ||||||||||||||||||||||||    
T  3312557 gagcacaaatataacataaattcattaaaagatcgtgaaaacaaggaagaaaaacacaaacccttcactacccacatattcatacaacccttatatgaat 3312656  T
Q  419 agagattctcccttacctctagtttgccgaattgatgacttcctacggtttaatctc-------tctctaatctctgtctcctttgcctattttctccac 511  Q
    ||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||       ||||| |||||||| |||||||||||||||||||||    
T  3312657 agagactcccccttatctctagtttgccgaattgatgacttcctacggttgaatctctctctgatctcttatctctgtttcctttgcctattttctccac 3312756  T
Q  512 aacc 515  Q
    ||||    
T  3312757 aacc 3312760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 599 - 722
Target Start/End: Original strand, 3312844 - 3312967
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    |||||||||||||||||||| |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3312844 gagtttgttactaatctttttagattactatgtttacctctatgtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 3312943  T
Q  699 ttttgtaactacatccctttgcta 722  Q
    || ||||||||||||  |||||||    
T  3312944 ttctgtaactacatcaatttgcta 3312967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 630 - 722
Target Start/End: Original strand, 3311155 - 3311247
Alignment:
Q  630 ttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactacatccctttgcta 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  3311155 ttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttctgtaactacatcactttgcta 3311247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 635 - 711
Target Start/End: Original strand, 32945551 - 32945627
Alignment:
Q  635 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 711  Q
    ||||||| ||||||||||||| ||||| ||||||||||| || |||| |||||| ||||||| ||| ||||||||||    
T  32945551 cctctagatttgttactaatcttttcatattactatttgcacctctatattttgttactattatttctgtaactaca 32945627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 428 - 487
Target Start/End: Original strand, 13695881 - 13695940
Alignment:
Q  428 cccttacctctagtttgccgaattgatgacttcctacggtttaatctctctctaatctct 487  Q
    ||||||||||||||||||||||||||||| || |||||||| |||| ||| |||| ||||    
T  13695881 cccttacctctagtttgccgaattgatgaatttctacggttgaatcactccctaagctct 13695940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 711
Target Start/End: Complemental strand, 11508596 - 11508485
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| ||| |||| |||||||||  | | |||| |||||||||||||||| ||||| |||||||| || || |||| || ||| ||||||| |    
T  11508596 gagtttgttaccaatttttttagattactatatgt-cctccaggtttgttactaatcttttcagattactatctgcacctctatatattgttactattat 11508498  T
Q  699 ttttgtaactaca 711  Q
    || |||| |||||    
T  11508497 ttctgtagctaca 11508485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 639 - 711
Target Start/End: Complemental strand, 18147481 - 18147409
Alignment:
Q  639 taggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 711  Q
    |||||||||||| |||| ||||| |||||||| || || |||| |||||| |||||||||||  |||||||||    
T  18147481 taggtttgttaccaatcttttcagattactatctgcacctctatattttgttactattctttcagtaactaca 18147409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 642 - 702
Target Start/End: Original strand, 34707315 - 34707375
Alignment:
Q  642 gtttgttactaatcatttcaaattactatttgtacttctagattttgctactattcttttt 702  Q
    |||||||||||||| |||||  ||||||||||||| ||||||| ||| ||||||| |||||    
T  34707315 gtttgttactaatcttttcaggttactatttgtacctctagatcttgttactatttttttt 34707375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 428 - 487
Target Start/End: Original strand, 13696089 - 13696148
Alignment:
Q  428 cccttacctctagtttgccgaattgatgacttcctacggtttaatctctctctaatctct 487  Q
    ||||| ||||||||||||||||||||||| || |||||||| |||| ||| |||| ||||    
T  13696089 cccttccctctagtttgccgaattgatgaatttctacggttgaatcactccctaagctct 13696148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 599 - 641
Target Start/End: Original strand, 34707313 - 34707355
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctag 641  Q
    ||||||||||||||||||||||| |||||| || |||||||||    
T  34707313 gagtttgttactaatcttttcaggttactatttgtacctctag 34707355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 599 - 709
Target Start/End: Complemental strand, 21143818 - 21143709
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| ||||||||||||||||||  | | ||||||||||||||||||||  ||||| | |||||||||||| ||||||||||| || ||||||    
T  21143818 gagtttgttaccaatcttttcagattactatatgt-cctctaggtttgttactaatattttcagaatactatttgtacatctagattttgttaatattct 21143720  T
Q  699 ttttgtaacta 709  Q
    |||||||||||    
T  21143719 ttttgtaacta 21143709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 711
Target Start/End: Original strand, 26658785 - 26658861
Alignment:
Q  635 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 711  Q
    ||||||||||||||| | ||  ||||||||||||||||| || ||| || |||| ||||||| ||| ||||||||||    
T  26658785 cctctaggtttgttattgattttttcaaattactatttgcacctctcgaatttgttactattatttatgtaactaca 26658861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 635 - 711
Target Start/End: Original strand, 26930374 - 26930450
Alignment:
Q  635 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 711  Q
    ||||||||||||||| | ||  ||||||||||||||||| || ||| || |||| ||||||| ||| ||||||||||    
T  26930374 cctctaggtttgttattgattttttcaaattactatttgcacctctcgaatttgttactattatttatgtaactaca 26930450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 293 - 396
Target Start/End: Original strand, 4680 - 4785
Alignment:
Q  293 gacaataatatacctaaaa-tcaaagcagcaact-agagcacaaatttaacataaattcattaaaaaatactgaaaacaaggaagaaaaacacaaacccc 390  Q
    |||||||||||||| |||| |||  ||||||| | |||||||||||||||||| ||||||| ||||||   ||||||||||||||||||||||||||||     
T  4680 gacaataatatacccaaaaatcacggcagcaaattagagcacaaatttaacatgaattcatcaaaaaaacatgaaaacaaggaagaaaaacacaaaccct 4779  T
Q  391 tcacta 396  Q
    ||||||    
T  4780 tcacta 4785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 397 - 487
Target Start/End: Complemental strand, 171543 - 171454
Alignment:
Q  397 ttcatacaacccttatatgaatagagattctcccttacctctagtttgccgaattgatgacttcctacggtttaatctctctctaatctct 487  Q
    ||||||||||| |||| |||||||||| || |||||||||||||||| ||||||||||||||||| || ||| ||||||||| ||| ||||    
T  171543 ttcatacaacc-ttatttgaatagagactcccccttacctctagttttccgaattgatgacttcccacagttgaatctctctttaagctct 171454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 709
Target Start/End: Complemental strand, 171295 - 171222
Alignment:
Q  636 ctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaacta 709  Q
    |||||||||||||||||||| |||||||||||||| || || |||  | |||| ||||||| ||| ||||||||    
T  171295 ctctaggtttgttactaatcttttcaaattactatatgcacctctcaaatttgttactattatttctgtaacta 171222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 359
Target Start/End: Complemental strand, 171689 - 171590
Alignment:
Q  260 acgaatttaggacctaaaaataatgaattcaacgacaataatatacctaaaatcaaagcagcaactagagcacaaatttaacataaattcattaaaaaat 359  Q
    |||||||||| || | |||||||||||||||| || || |||||||  ||||||| | ||| || |  |||||  ||||||||||||||||||| |||||    
T  171689 acgaatttagcacatgaaaataatgaattcaaagaaaagaatatacacaaaatcacaacagtaaatcaagcacggatttaacataaattcattataaaat 171590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 397 - 487
Target Start/End: Original strand, 14645747 - 14645836
Alignment:
Q  397 ttcatacaacccttatatgaatagagattctcccttacctctagtttgccgaattgatgacttcctacggtttaatctctctctaatctct 487  Q
    ||||||||||| |||| |||||||||| || |||||||||||||||| ||||||||||||||||| || ||| ||||||||| ||| ||||    
T  14645747 ttcatacaacc-ttatttgaatagagactcccccttacctctagttttccgaattgatgacttcccacagttgaatctctctttaagctct 14645836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 599 - 713
Target Start/End: Complemental strand, 25126121 - 25126009
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| |||||||| |||||||||  | | ||||||||||||||||||||| ||||||||||||||||| || | | || |||  ||||||| |    
T  25126121 gagtttgttac-aatctttttagattactaaatgt-cctctaggtttgttactaatcttttcaaattactatttgcaccttttgaatttattactattat 25126024  T
Q  699 ttttgtaactacatc 713  Q
    || ||||||||||||    
T  25126023 ttatgtaactacatc 25126009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 599 - 711
Target Start/End: Complemental strand, 13884177 - 13884066
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| || ||||| |||||||||  | | ||||||||||| |||  |||| ||||| |||||||||||||| ||||  ||||| |||||||||    
T  13884177 gagtttgttaccaaactttttagattactatatgt-cctctaggtttattaacaatcttttcagattactatttgtacctctaatttttgttactattct 13884079  T
Q  699 ttttgtaactaca 711  Q
    | | |||||||||    
T  13884078 tctcgtaactaca 13884066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 600 - 655
Target Start/End: Original strand, 18873786 - 18873841
Alignment:
Q  600 agtttgttactaatcttttcagattactacttttacctctaggtttgttactaatc 655  Q
    ||||||||| |||||||||||||||||||  | |||||||| ||||||||||||||    
T  18873786 agtttgttattaatcttttcagattactatatgtacctctaagtttgttactaatc 18873841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 709
Target Start/End: Original strand, 14645995 - 14646068
Alignment:
Q  636 ctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaacta 709  Q
    |||||||||||||||||||| |||||||||||||| || || |||  | |||| ||||||| ||| ||||||||    
T  14645995 ctctaggtttgttactaatcttttcaaattactatatgcacctctcaaatttgttactattatttctgtaacta 14646068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 14645602 - 14645701
Alignment:
Q  260 acgaatttaggacctaaaaataatgaattcaacgacaataatatacctaaaatcaaagcagcaactagagcacaaatttaacataaattcattaaaaaat 359  Q
    |||||||||| || | |||||||||||||||| || || |||||||  ||||||| | ||| || |  |||||  ||||||||||||||||||| |||||    
T  14645602 acgaatttagcacatgaaaataatgaattcaaagaaaagaatatacacaaaatcacaacagtaaatcaagcacggatttaacataaattcattataaaat 14645701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 431 - 481
Target Start/End: Original strand, 23974153 - 23974203
Alignment:
Q  431 ttacctctagtttgccgaattgatgacttcctacggtttaatctctctcta 481  Q
    ||||||||||||||| |||||||||| ||||||||||  ||||| ||||||    
T  23974153 ttacctctagtttgcagaattgatgatttcctacggtgaaatctttctcta 23974203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 264 - 396
Target Start/End: Complemental strand, 25126474 - 25126341
Alignment:
Q  264 atttaggacctaaaaataatgaattcaacgacaataatatacctaaaatcaaagcagcaact-agagcacaaatttaacataaattcattaaaaaatact 362  Q
    |||||| || ||||||||||||| |||  ||||| ||||||| ||| |||| || || || | ||||||| |||| ||||| |||| ||||||| ||       
T  25126474 atttagcacataaaaataatgaactcagagacaagaatatacataagatcatagtagtaaattagagcacgaattgaacatgaatttattaaaagatcaa 25126375  T
Q  363 gaaaacaaggaagaaaaacacaaacccctcacta 396  Q
    |||||||| ||||||||||| ||| || ||||||    
T  25126374 gaaaacaaagaagaaaaacataaatccttcacta 25126341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 466
Target Start/End: Original strand, 3593068 - 3593138
Alignment:
Q  398 tcatacaacccttat-atgaatagagattctccc-ttacctctagtttgccgaattgatgacttcctacgg 466  Q
    ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |||||||||    
T  3593068 tcatacaacccttatgatgaatagagactctccccttacctctagtttgccgaattgatgatttcctacgg 3593138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 397 - 515
Target Start/End: Complemental strand, 18534519 - 18534395
Alignment:
Q  397 ttcatacaacccttata-tgaatagagattctcccttacctctagtttgccgaa-ttgatgacttcctacggtttaatctctctct----aatctctgtc 490  Q
    ||||||||| ||||||  |||||||||| || ||||||||||||||||  |||| ||||||| |||||| |||| |||||||||||    | ||| || |    
T  18534519 ttcatacaatccttatggtgaatagagactcccccttacctctagttttgcgaaattgatgatttcctatggttgaatctctctctctatactctttgcc 18534420  T
Q  491 tcctttgcctattttctccacaacc 515  Q
    |||||||||| ||||||||||||||    
T  18534419 tcctttgcctcttttctccacaacc 18534395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 705
Target Start/End: Complemental strand, 18705409 - 18705304
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| ||| |||| |||||||||  | | ||||||| ||||||||||||| |||||||||||||| |  || ||| || |||| ||||||| |    
T  18705409 gagtttgttaccaatatttttagattactatatgt-cctctagctttgttactaatcttttcaaattactatcttcacctcttgaatttgttactattat 18705311  T
Q  699 ttttgta 705  Q
    |||||||    
T  18705310 ttttgta 18705304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 711
Target Start/End: Complemental strand, 9733510 - 9733400
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    |||| |||||| |||||||| |||||||||  | | |||| |||||||||||||||| |||||||||||||| || || |||| || ||| ||||||| |    
T  9733510 gagtatgttaccaatctttttagattactatatgt-cctccaggtttgttactaatc-tttcaaattactatctgcacctctatatattgttactattat 9733413  T
Q  699 ttttgtaactaca 711  Q
    || |||| |||||    
T  9733412 ttctgtagctaca 9733400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 32657378 - 32657326
Alignment:
Q  325 tagagcacaaatttaacataaattcattaaaaaatactgaaaacaaggaagaa 377  Q
    ||||||||||||||||||| |||||||||||| ||  ||||||||| ||||||    
T  32657378 tagagcacaaatttaacatgaattcattaaaagatcatgaaaacaaagaagaa 32657326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 642 - 711
Target Start/End: Complemental strand, 12484142 - 12484073
Alignment:
Q  642 gtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactaca 711  Q
    |||||||||||||| ||||| |||||||| || || ||||||||||| ||||||||||||||||||||||    
T  12484142 gtttgttactaatcttttcagattactatctgcacctctagattttgttactattctttttgtaactaca 12484073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 713
Target Start/End: Original strand, 12786445 - 12786558
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| |||||||| | |||||||  | | | ||||||||||||||||||| |||||||||||||| || || ||| || |||| ||||||  |    
T  12786445 gagtttgttaccaatctttttatattactatatgt-cttctaggtttgttactaatcttttcaaattactatctgcacctctcgaatttgttactatcat 12786543  T
Q  699 ttttgtaactacatc 713  Q
    || ||||| ||||||    
T  12786544 ttatgtaattacatc 12786558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 711
Target Start/End: Complemental strand, 9131567 - 9131456
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| |||| ||| |||||||| || |  |||||| |||||||||||||| |||||||||||||| |  || ||| || |||| ||| ||| |    
T  9131567 gagtttgttaccaatcgttttagattact-ctatgtcctctaagtttgttactaatcttttcaaattactatcttcacctctcgaatttgttaccatttt 9131469  T
Q  699 ttttgtaactaca 711  Q
    || ||||||||||    
T  9131468 ttctgtaactaca 9131456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 628
Target Start/End: Complemental strand, 12484144 - 12484115
Alignment:
Q  599 gagtttgttactaatcttttcagattacta 628  Q
    ||||||||||||||||||||||||||||||    
T  12484144 gagtttgttactaatcttttcagattacta 12484115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 599 - 711
Target Start/End: Original strand, 19893077 - 19893188
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| |||||||| |||||||||  | | ||||||| ||||||||||||| ||||| |||||||| || || |||| |||||| ||||||| |    
T  19893077 gagtttgttaccaatctttttagattactatatgt-cctctagatttgttactaatcttttcagattactatctgcacctctatattttgatactattat 19893175  T
Q  699 ttttgtaactaca 711  Q
    || ||||||||||    
T  19893176 ttatgtaactaca 19893188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 663 - 713
Target Start/End: Original strand, 9548991 - 9549041
Alignment:
Q  663 attactatttgtacttctagattttgctactattctttttgtaactacatc 713  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  9548991 attactatttgtacctctagattttgttactattcttcttgtaactacatc 9549041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 635 - 699
Target Start/End: Complemental strand, 19565093 - 19565029
Alignment:
Q  635 cctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctt 699  Q
    ||||||||||||||||||||| ||||| |||||||||||||| ||||  ||||| ||| ||||||    
T  19565093 cctctaggtttgttactaatcttttcagattactatttgtacctctaatttttgttaccattctt 19565029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 640
Target Start/End: Complemental strand, 19565086 - 19565047
Alignment:
Q  601 gtttgttactaatcttttcagattactacttttacctcta 640  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  19565086 gtttgttactaatcttttcagattactatttgtacctcta 19565047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 599 - 699
Target Start/End: Complemental strand, 19566774 - 19566674
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctct-aggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattc 697  Q
    ||||||||||| |||||||| ||||||||| | |  ||||| || ||||||||||||  ||||||||||  |||||||| ||||  ||||| ||||||||    
T  19566774 gagtttgttaccaatctttttagattacta-tatgtcctctaagttttgttactaatattttcaaattatcatttgtacctctaatttttgttactattc 19566676  T
Q  698 tt 699  Q
    ||    
T  19566675 tt 19566674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 600 - 655
Target Start/End: Original strand, 183153 - 183208
Alignment:
Q  600 agtttgttactaatcttttcagattactacttttacctctaggtttgttactaatc 655  Q
    |||||||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  183153 agtttgttactaatcttttcagattactatatgtacctctaggtttgttactaatc 183208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 599 - 711
Target Start/End: Original strand, 40391581 - 40391692
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattct 698  Q
    ||||||||||| |||||||| | |||||||  | | ||||||| ||||||||| ||| ||| ||||||||||||| || ||| || |||| ||||||| |    
T  40391581 gagtttgttaccaatctttttatattactatatgt-cctctagttttgttacttatctttttaaattactatttgcacctctcgaatttgttactattat 40391679  T
Q  699 ttttgtaactaca 711  Q
    |||||||||||||    
T  40391680 ttttgtaactaca 40391692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 599 - 711
Target Start/End: Original strand, 42147626 - 42147738
Alignment:
Q  599 gagtttgttactaatcttttcagattactacttttacctctaggtttgttactaatc-atttcaaattactatttgtacttctagattttgctactattc 697  Q
    ||||||||||| |||||||| ||||||||| | |  |||||| ||||||||||||||  |||||  ||||| ||||||| |||| |||||| ||||||||    
T  42147626 gagtttgttaccaatctttttagattacta-tatgtcctctatgtttgttactaatctttttcaggttactgtttgtacctctaaattttgttactattc 42147724  T
Q  698 tttttgtaactaca 711  Q
    ||  ||||||||||    
T  42147725 ttcgtgtaactaca 42147738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 40391288 - 40391367
Alignment:
Q  325 tagagcacaaatttaacata--aattcattaaaaaatactgaaaacaaggaagaaaaacacaaacccctcactattcata 402  Q
    |||||||||||||||||||   |||||||||||| ||   |||||||| |||||||||||||||||| |||||| |||||    
T  40391288 tagagcacaaatttaacatctcaattcattaaaagattaagaaaacaaagaagaaaaacacaaacccttcactactcata 40391367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 639 - 713
Target Start/End: Complemental strand, 20263555 - 20263481
Alignment:
Q  639 taggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactacatc 713  Q
    ||||||||||||||||| |||||||||||||||||||| |||| |||||| |  ||| ||| || ||||||||||    
T  20263555 taggtttgttactaatcttttcaaattactatttgtacctctaaattttgtttatatacttcttctaactacatc 20263481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 430 - 487
Target Start/End: Complemental strand, 15266978 - 15266921
Alignment:
Q  430 cttacctctagtttgccgaattgatgacttcctacggtttaatctctctctaatctct 487  Q
    ||||||||||||||| ||||||||||| ||||||| ||| ||||||||||||| ||||    
T  15266978 cttacctctagtttgtcgaattgatgaattcctaccgttgaatctctctctaagctct 15266921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 600 - 711
Target Start/End: Complemental strand, 32623486 - 32623376
Alignment:
Q  600 agtttgttactaatcttttcagattactacttttacctctaggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctt 699  Q
    ||||||| ||||||||||| |||||||||  | | | ||||||||||||||||||| |||||||||| ||| || || ||| || |||| ||||||| ||    
T  32623486 agtttgtcactaatctttttagattactatatgt-catctaggtttgttactaatcttttcaaattattatctgcacctcttgaatttgttactattatt 32623388  T
Q  700 tttgtaactaca 711  Q
    | |||| |||||    
T  32623387 tctgtagctaca 32623376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 256 - 357
Target Start/End: Original strand, 20180784 - 20180886
Alignment:
Q  256 aatcacgaatttaggacctaaaaataatgaattcaacgacaataatatacctaaaatcaaagcag-caactagagcacaaatttaacataaattcattaa 354  Q
    ||||| |||||||| || ||||||||||||| |||| ||||| || ||||| ||||||| | |||  || |||| ||| |||||||||| ||||||||||    
T  20180784 aatcatgaatttagcacataaaaataatgaactcaaagacaagaaaatacccaaaatcacaacagaaaagtagatcacgaatttaacatgaattcattaa 20180883  T
Q  355 aaa 357  Q
    |||    
T  20180884 aaa 20180886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 713
Target Start/End: Complemental strand, 27386800 - 27386728
Alignment:
Q  641 ggtttgttactaatcatttcaaattactatttgtacttctagattttgctactattctttttgtaactacatc 713  Q
    ||||||||||||||| |||||||||||||| || || |||  | |||| ||||||| ||| ||||||||||||    
T  27386800 ggtttgttactaatcttttcaaattactatctgcacctctcaaatttgttactattatttctgtaactacatc 27386728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 478
Target Start/End: Original strand, 1837 - 1922
Alignment:
Q  395 tattcatacaacccttata-tgaatagagattctccct-tacctctagtttgccgaattgatgacttcctacggtttaatctctct 478  Q
    ||||||||||||||||||  | |||||||| || |||  |||||||||||||| |||||||||| ||||||||||  |||||||||    
T  1837 tattcatacaacccttatggtaaatagagactccccccatacctctagtttgcagaattgatgatttcctacggtgaaatctctct 1922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 48282 - 48322
Alignment:
Q  428 cccttacctctagtttgccgaattgatgacttcctacggtt 468  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  48282 cccttacctctagttttccgaattgatgaattcctacggtt 48322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 481
Target Start/End: Complemental strand, 35556 - 35502
Alignment:
Q  428 cccttacctctagtttgccgaatt-gatgacttcctacggtttaatctctctcta 481  Q
    ||||||||||||||||| |||||| ||||| ||||||||||  ||||||||||||    
T  35556 cccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctctcta 35502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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