View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_low_30 (Length: 204)
Name: NF13395_low_30
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 6e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 6e-76
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 20132674 - 20132531
Alignment:
| Q |
19 |
cataggaaccggcaactgtattggaagaacgaccgacatcaccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtcc |
118 |
Q |
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| T |
20132674 |
cataggaaccggcaactgtattggaagaacgaccgacatcaccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtcc |
20132575 |
T |
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| Q |
119 |
aatcaagatgttattggctttaatatctctgtggactataggag |
162 |
Q |
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| T |
20132574 |
aatcaagatgttattggctttaatatctctgtggactataggag |
20132531 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 21468650 - 21468548
Alignment:
| Q |
60 |
ccatcatcaacaagcttagccaagccaaaatcagcaatataaggttcaaattcaagtccaatcaagatgttattggctttaatatctctgtggactatag |
159 |
Q |
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| T |
21468650 |
ccatcatcaacaagtttcgcaagtccaaaatcagctatgtatggttcaaattcaagacctatgaggatgttgttggccttaatatctctgtgaacaatag |
21468551 |
T |
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| Q |
160 |
gag |
162 |
Q |
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||| |
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| T |
21468550 |
gag |
21468548 |
T |
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