View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13395_low_4 (Length: 714)

Name: NF13395_low_4
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13395_low_4
NF13395_low_4
[»] chr7 (7 HSPs)
chr7 (478-713)||(7632333-7632568)
chr7 (480-714)||(7639036-7639270)
chr7 (296-412)||(7632634-7632752)
chr7 (204-254)||(859403-859453)
chr7 (204-254)||(1217407-1217457)
chr7 (204-254)||(1220680-1220730)
chr7 (211-254)||(13886441-13886484)
[»] chr2 (13 HSPs)
chr2 (18-214)||(15827582-15827778)
chr2 (200-295)||(2155718-2155813)
chr2 (200-295)||(2165674-2165769)
chr2 (200-295)||(35682004-35682099)
chr2 (200-278)||(22264203-22264281)
chr2 (204-254)||(33655418-33655468)
chr2 (204-295)||(31636085-31636177)
chr2 (204-254)||(22011224-22011274)
chr2 (204-248)||(27952572-27952616)
chr2 (204-248)||(27956408-27956452)
chr2 (210-254)||(31633896-31633940)
chr2 (204-248)||(15129216-15129260)
chr2 (200-234)||(8781323-8781357)
[»] chr8 (11 HSPs)
chr8 (200-295)||(22922094-22922189)
chr8 (200-295)||(18468467-18468562)
chr8 (211-297)||(22926889-22926973)
chr8 (204-297)||(23570336-23570429)
chr8 (204-278)||(37189634-37189708)
chr8 (204-248)||(42891918-42891962)
chr8 (200-295)||(18180931-18181026)
chr8 (204-278)||(23573350-23573425)
chr8 (211-254)||(6845129-6845172)
chr8 (205-247)||(22512296-22512338)
chr8 (203-236)||(42890217-42890250)
[»] chr6 (9 HSPs)
chr6 (200-295)||(3535786-3535881)
chr6 (200-295)||(3541997-3542092)
chr6 (200-295)||(30049667-30049761)
chr6 (200-295)||(30051954-30052048)
chr6 (200-295)||(11194416-11194511)
chr6 (204-295)||(18726883-18726974)
chr6 (200-293)||(11190252-11190345)
chr6 (211-295)||(18203234-18203318)
chr6 (210-296)||(29341045-29341132)
[»] chr1 (5 HSPs)
chr1 (200-295)||(8930975-8931070)
chr1 (200-254)||(50857687-50857741)
chr1 (229-293)||(23989025-23989090)
chr1 (229-296)||(23987360-23987428)
chr1 (266-295)||(12034239-12034268)
[»] scaffold0110 (2 HSPs)
scaffold0110 (211-295)||(45871-45955)
scaffold0110 (200-279)||(46948-47027)
[»] chr5 (5 HSPs)
chr5 (200-295)||(19501193-19501288)
chr5 (204-292)||(40779034-40779122)
chr5 (204-287)||(21845137-21845221)
chr5 (204-287)||(21849218-21849302)
chr5 (204-287)||(21857132-21857216)
[»] chr4 (8 HSPs)
chr4 (200-277)||(13085335-13085412)
chr4 (204-295)||(6659577-6659668)
chr4 (200-278)||(19935275-19935353)
chr4 (204-254)||(22691099-22691149)
chr4 (244-296)||(50519523-50519576)
chr4 (210-254)||(22716454-22716498)
chr4 (210-254)||(22988719-22988763)
chr4 (597-637)||(54219756-54219796)
[»] chr3 (4 HSPs)
chr3 (210-295)||(19795019-19795104)
chr3 (204-262)||(45168540-45168598)
chr3 (204-248)||(43306919-43306963)
chr3 (204-254)||(43304205-43304255)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 478 - 713
Target Start/End: Complemental strand, 7632568 - 7632333
Alignment:
Q  478 tcaaacatacctgaagagattcatctgataagctgagagactttacgctacttaatccactcaatagctcaattgcacattggccagaataatgtttgtc 577  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7632568 tcaaacatacctgaagagatccatctgataagctgagagactttacgctacttaatccactcaatagctcaattgcacattggccagaataatgtttgtc 7632469  T
Q  578 tggtaaattgcaacaccctagatctatatctgcatcaactatggaggttggtttaacaaggaaaaactctacttctggattgcttgtgcaacatagagat 677  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  7632468 tggtaaagtgcaacaccctagatctatatctgcatcaactatggaggttggtttaacaaggaaaaactctacttctggatcgctttggcaacatagagat 7632369  T
Q  678 aaaagattctcaacatcaattgtgattgtacatttg 713  Q
    |||||||||| |||||||||||||||||||||||||    
T  7632368 aaaagattcttaacatcaattgtgattgtacatttg 7632333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 480 - 714
Target Start/End: Complemental strand, 7639270 - 7639036
Alignment:
Q  480 aaacatacctgaagagattcatctgataagctgagagactttacgctacttaatccactcaatagctcaattgcacattggccagaataatgtttgtctg 579  Q
    ||||||||||||||| | || ||||||||  ||||||| ||||| ||||| | ||||||||||||||||||||||| ||| || |||   ||| | |||     
T  7639270 aaacatacctgaagaaaatcctctgataatttgagagattttacactactaagtccactcaatagctcaattgcacgttgacctgaaacttgtgtttctt 7639171  T
Q  580 gtaaattgcaacaccctagatctatatctgcatcaactatggaggttggtttaacaaggaaaaactctacttctggattgcttgtgcaacatagagataa 679  Q
     |  |||  ||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7639170 ttggattaaaacacccaagatgtatatatgcatcaactatggaggttggtttaacaaggaaaaactctacttctggattgcttgtgcaacatagagataa 7639071  T
Q  680 aagattctcaacatcaattgtgattgtacatttgt 714  Q
    |||||||||||||||||||||||||||||||||||    
T  7639070 aagattctcaacatcaattgtgattgtacatttgt 7639036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 7632752 - 7632634
Alignment:
Q  296 atactagtagtacaaaaagcataaatagtttgatcattatgatataaagaacaatgcaatgagtataaat--nnnnnnncacaaataaggcaacattgtt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||    
T  7632752 atactagtagtacaaaaagcataaatagtttgatcattatgatataaagaacaatgcaatgagtataaataaaaaaaaacacaaataaggcaacattgtt 7632653  T
Q  394 aattcgaattatcttaaac 412  Q
    |||| ||||||||||||||    
T  7632652 aattggaattatcttaaac 7632634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 859403 - 859453
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  859403 aaaacgaaataataatagaaagttctagaaaattactaagatttggctaaa 859453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 1217407 - 1217457
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  1217407 aaaacgaaataataatagaaagttctagaaaattactaagatttggctaaa 1217457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 1220680 - 1220730
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  1220680 aaaacgaaataataatagaaagttctagaaaattactaagatttggctaaa 1220730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 13886441 - 13886484
Alignment:
Q  211 aataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  13886441 aataataatagagagttctagaaaattactaagatttgactaaa 13886484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 9e-72; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 15827582 - 15827778
Alignment:
Q  18 acattttgtattttgatggacatgaaannnnnnncattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtggctaaaaaggtctt 117  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15827582 acattttgtattttgatggacatgaaatttgtttcattgtgacctattgtattctcaaccccatagaaatcgtaataaaatttgtggctgaaaaggtctt 15827681  T
Q  118 gctttcaaatagttaaaatagcaatccataactaggagtgannnnnnnnnncaactaacaactaagttataatgaaaacagcaaacaaaacaaaata 214  Q
    |||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||| ||||    
T  15827682 gctttcaaatagttaaaatagcaatccataactaggagtgatttttttttccaactaacaactaagttataatgaaaacagcaaacaaaacacaata 15827778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 2155813 - 2155718
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  2155813 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactataaaattactaaggaaaccctcctacatca 2155718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 2165769 - 2165674
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  2165769 aaacaaaacaaaataataatacaaagttctaaaaaatcactaagatttgactaaaataaaatactataaaattactaaggaaactctcctacatca 2165674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 35682099 - 35682004
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||| || ||||||| |||||    
T  35682099 aaacaaaacgaaataacaatagaaagttctagaaaattactaagatttggctaaaataaaatactataaaattactaagaaaaccctcctgcatca 35682004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 22264281 - 22264203
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaag 278  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||   |||||||||||    
T  22264281 aaacaaaacaaaataataatagaaagttctagaaaattactaagatttggctaaaataaaatactactaaattactaag 22264203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 33655468 - 33655418
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  33655468 aaaacaaaataataatagaaagttctagaaaattactaagatttggctaaa 33655418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 31636177 - 31636085
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |  |||||||   ||||||||||  || |||||||||||||    
T  31636177 aaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaaccctcctacatca 31636085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 22011274 - 22011224
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  22011274 aaaacgaaataataatagaaagttctagaaaattactaagatttggctaaa 22011224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 27952572 - 27952616
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttg 248  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||    
T  27952572 aaaacgaaataataatagaaagttctagaaaattactaagatttg 27952616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 27956408 - 27956452
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttg 248  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||    
T  27956408 aaaacgaaataataatagaaagttctagaaaattactaagatttg 27956452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 31633940 - 31633896
Alignment:
Q  210 aaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  31633940 aaataataatagaaagttctagaaaattactaagatttggctaaa 31633896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Complemental strand, 15129260 - 15129216
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttg 248  Q
    ||||| |||||||||||| |||||||||||||| |||||||||||    
T  15129260 aaaacgaaataataataggaagttctagaaaattactaagatttg 15129216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 8781357 - 8781323
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaa 234  Q
    ||||||||| |||||||||||||||||||||||||    
T  8781357 aaacaaaacgaaataataatagaaagttctagaaa 8781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 3e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 22922094 - 22922189
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22922094 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactataaaattactaaggaagccctcctacatca 22922189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 18468562 - 18468467
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||    
T  18468562 aaacaaaacgaaataataatagaaagttctagaaaattactaagatttggttaaaataaaatactataaaattactaaggaagccctcctacatca 18468467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 211 - 297
Target Start/End: Original strand, 22926889 - 22926973
Alignment:
Q  211 aataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatcaat 297  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  22926889 aataataatagaaagttctagaaaatcactaa--tttgactaaaataaaatactataaaattactaaggaagccctcctacatcaat 22926973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 204 - 297
Target Start/End: Complemental strand, 23570429 - 23570336
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaaggaagccctcctacatcaat 297  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||| |||| |  ||||||| |||||||||||| ||| |||||||||||||||    
T  23570429 aaaacgaaataaaaatagaaagttctagaaaattactaagatttgattaaataataaatactataaaattactaa-gaaaccctcctacatcaat 23570336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 37189708 - 37189634
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaag 278  Q
    ||||||||||||||||| ||||||||| ||| | ||||||||||| |||||||||||||||   |||||||||||    
T  37189708 aaaacaaaataataatataaagttctaaaaagttactaagatttggctaaaataaaatactactaaattactaag 37189634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 42891918 - 42891962
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttg 248  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||    
T  42891918 aaaacgaaataataatagaaagttctagaaaattactaagatttg 42891962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 18180931 - 18181026
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||| |||||| |||||||| ||||| ||||| | |||||||||| | ||||||||||||   ||||||||||| || |  ||||||||||    
T  18180931 aaacaaaacgaaataagaatagaaatttctaaaaaattattaagatttgagttaaataaaatactactaaattactaagaaaactgtcctacatca 18181026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 23573425 - 23573350
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaag 278  Q
    ||||| |||||| |||||||||||||||||||| |||||||||||  |||| |  ||||||| |||||||||||||    
T  23573425 aaaacgaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaag 23573350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 6845172 - 6845129
Alignment:
Q  211 aataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    |||||||||||| |||| |||||||| |||||||||||||||||    
T  6845172 aataataatagagagttttagaaaattactaagatttgactaaa 6845129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 22512296 - 22512338
Alignment:
Q  205 aaacaaaataataatagaaagttctagaaaatcactaagattt 247  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||    
T  22512296 aaacgaaataataatataaagttctagaaaattactaagattt 22512338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 42890250 - 42890217
Alignment:
Q  203 caaaacaaaataataatagaaagttctagaaaat 236  Q
    ||||| ||||||||||||||||||||||||||||    
T  42890250 caaaataaaataataatagaaagttctagaaaat 42890217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 3535881 - 3535786
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3535881 aaacaaaacaaaataataatagaaagttctagaaaatcattaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 3535786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 3542092 - 3541997
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3542092 aaacaaaacaaaataataatagaaagttctagaaaatcattaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 3541997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 30049761 - 30049667
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  30049761 aaacaaaacaaaataataatagaaagttctagaaaatcactaaaatttggctaaaa-aaaatactataaaattactaaggaagccctcctacatca 30049667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 30052048 - 30051954
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  30052048 aaacaaaacaaaataataatagaaagttctagaaaatcactaaaatttggctaaaa-aaaatactataaaattactaaggaagccctcctacatca 30051954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 11194511 - 11194416
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||   ||||||||||| || | |||||||||||    
T  11194511 aaacaaaacaaaataatactagaaagttctagaaaattactaagatttggctaaaataaaatactactaaattactaagaaaactctcctacatca 11194416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 204 - 295
Target Start/End: Complemental strand, 18726974 - 18726883
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||||  || ||||||| |||||    
T  18726974 aaaacgaaataataatagaaagttctagaaaatgactaagatttggctaaaataaaaaactataaaattactaaaaaaaccctcctgcatca 18726883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 200 - 293
Target Start/End: Complemental strand, 11190345 - 11190252
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacat 293  Q
    ||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||| | |||||| |||| || |||| ||||||    
T  11190345 aaacaaaacaatataataatagaaagttctagaaaattacttaggtttgactaaaataaaatactattaaattattaagaaaacccttctacat 11190252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 211 - 295
Target Start/End: Complemental strand, 18203318 - 18203234
Alignment:
Q  211 aataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    |||||||||||| ||||||||||||| ||||||||||||||||| |  ||||||| |||||||||| | ||| |||||||||||||    
T  18203318 aataataatagagagttctagaaaattactaagatttgactaaataataaatactataaaattactga-gaaaccctcctacatca 18203234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 29341045 - 29341132
Alignment:
Q  210 aaataataatagaaagttctagaaaatcactaagatttgactaaaata-aaatactttaaaattactaaggaagccctcctacatcaa 296  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||| | |||||||   ||||||||||  || ||||||||||||||    
T  29341045 aaataataatagaaagttttagaaaattactaagatttggctaaaaaataaatactactaaattactaataaaaccctcctacatcaa 29341132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 3e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 8931070 - 8930975
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8931070 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagtcctcctacatca 8930975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 50857687 - 50857741
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  50857687 aaacaaaacgaaataataatagaaagttctagaaaattactaagatttggctaaa 50857741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 23989090 - 23989025
Alignment:
Q  229 tagaaaatcactaagatttgactaaaataaaa-tactttaaaattactaaggaagccctcctacat 293  Q
    |||||||| ||||| ||||| ||||||||||| |||| | |||||||||||||| |||||||||||    
T  23989090 tagaaaattactaaaatttggctaaaataaaaatactatgaaattactaaggaaaccctcctacat 23989025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 23987428 - 23987360
Alignment:
Q  229 tagaaaatcactaagatttgactaaaataaaa-tactttaaaattactaaggaagccctcctacatcaa 296  Q
    |||||||| ||||| ||||  ||||||||||| |||| | |||||||||||||| ||||||||||||||    
T  23987428 tagaaaattactaaaatttagctaaaataaaaatactatgaaattactaaggaaaccctcctacatcaa 23987360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 295
Target Start/End: Original strand, 12034239 - 12034268
Alignment:
Q  266 taaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||    
T  12034239 taaaattactaaggaagccctcctacatca 12034268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 45871 - 45955
Alignment:
Q  211 aataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  45871 aataataatagaaagttctagaaaatcactaaaatttggctaaaataaaatactataaaattactaaggaagccctcctacatca 45955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 200 - 279
Target Start/End: Original strand, 46948 - 47027
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaagg 279  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  46948 aaacaaaacaaaataataatagaaagttctagaaaatcactaaaatttgactaaaataaaatactataaaattactaagg 47027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 200 - 295
Target Start/End: Original strand, 19501193 - 19501288
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||  |||||||||||||| |||||||||||| ||| |||||||||||||    
T  19501193 aaacaaaacaaaataataatagaaagttttagaaaattactaagatttgggtaaaataaaatactataaaattactaaagaaaccctcctacatca 19501288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 204 - 292
Target Start/End: Original strand, 40779034 - 40779122
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaaggaagccctcctaca 292  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |  ||||||| |||||||||||| ||| ||||||||||    
T  40779034 aaaacgaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactgtaaaattactaa-gaaaccctcctaca 40779122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 21845137 - 21845221
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaaggaagccctc 287  Q
    |||||||||||| |||||||||||||||||||| |||||||||||  |||| |  ||||||| ||||||||||||| || |||||    
T  21845137 aaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctc 21845221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 21849218 - 21849302
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaaggaagccctc 287  Q
    |||||||||||| |||||||||||||||||||| |||||||||||  |||| |  ||||||| ||||||||||||| || |||||    
T  21849218 aaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctc 21849302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 204 - 287
Target Start/End: Original strand, 21857132 - 21857216
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaaggaagccctc 287  Q
    |||||||||||| |||||||||||||||||||| |||||||||||  |||| |  ||||||| ||||||||||||| || |||||    
T  21857132 aaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctc 21857216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 13085335 - 13085412
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaa 277  Q
    ||||||||| |||||||||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||||||    
T  13085335 aaacaaaacgaaataataatagaaagttctagaatattactaagatgtggctaaaataaaatactataaaattactaa 13085412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 204 - 295
Target Start/End: Original strand, 6659577 - 6659668
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa-ataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |  ||||||| |||||||||||| ||| |||||||||||||    
T  6659577 aaaacaaaataataatagaaagttctagaaaattactaagatttggctaaataataaatactgtaaaattactaa-gaaaccctcctacatca 6659668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 19935353 - 19935275
Alignment:
Q  200 aaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaag 278  Q
    ||||||||| ||||||||||||||||||||  ||||| | |||||||||||||||||||||||||   |||||||||||    
T  19935353 aaacaaaacgaaataataatagaaagttctgaaaaatgattaagatttgactaaaataaaatactactaaattactaag 19935275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 22691149 - 22691099
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||| |||||    
T  22691149 aaaacgaaataataatacaaagttctagaaaattactaagatttggctaaa 22691099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Original strand, 50519523 - 50519576
Alignment:
Q  244 atttgactaaaataaaa-tactttaaaattactaaggaagccctcctacatcaa 296  Q
    ||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||    
T  50519523 atttggctaaaataaaaatactataaaattactaaggaaaccctcctacatcaa 50519576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 22716498 - 22716454
Alignment:
Q  210 aaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  22716498 aaataataatagaaagttctagaaaattattaagatttggctaaa 22716454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 22988719 - 22988763
Alignment:
Q  210 aaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  22988719 aaataataatagaaagttctagaaaattattaagatttggctaaa 22988763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 637
Target Start/End: Original strand, 54219756 - 54219796
Alignment:
Q  597 agatctatatctgcatcaactatggaggttggtttaacaag 637  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  54219756 agatcaatatatgcatcaactatggaggttggtttaacaag 54219796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 210 - 295
Target Start/End: Complemental strand, 19795104 - 19795019
Alignment:
Q  210 aaataataatagaaagttctagaaaatcactaagatttgactaaaataaaatactttaaaattactaaggaagccctcctacatca 295  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||  |||||||||||| |||  ||||||||||||    
T  19795104 aaataataatagaaagttctagaaaattactaagatttagctaaaataaaataccgtaaaattactaaagaaatcctcctacatca 19795019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 45168540 - 45168598
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaaataaaata 262  Q
    ||||| |||||||||||||| ||| |||||||| ||||| ||||| |||||||||||||    
T  45168540 aaaacgaaataataatagaaggttttagaaaattactaaaatttgcctaaaataaaata 45168598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 43306919 - 43306963
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttg 248  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||    
T  43306919 aaaacgaaataataatagaatgttctagaaaattactaagatttg 43306963  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 43304205 - 43304255
Alignment:
Q  204 aaaacaaaataataatagaaagttctagaaaatcactaagatttgactaaa 254  Q
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T  43304205 aaaacgaaatactaatagaaagttatagaaaattactaagatttggctaaa 43304255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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