View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_low_5 (Length: 672)
Name: NF13395_low_5
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 642; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Complemental strand, 8058843 - 8058182
Alignment:
| Q |
1 |
aattagaaagagtaatgtaggaaaaaataaaataaaggggttcttaatcgattgatcgaacttcggtgttagctgacattttctctaaatctaacggtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058843 |
aattagaaagagtaatgtaggaaaaaataaaataaaggggttcttaatcgattgatcgaacttcggtgttagctgacattttctctaaatctaacggtct |
8058744 |
T |
|
| Q |
101 |
ctacaactacaacatcgtgcatcaactcgagcggatccaaattcttcttattggtaatttgtgtcaggaagctaagggaagtacctgtgatgtgcttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058743 |
ctacaactacaacatcgtgcatcaactcgagcggatccaaattcttcttattggtaatttgtgtcaggaagctaagggaagtacctgtgatgtgcttgaa |
8058644 |
T |
|
| Q |
201 |
tggtactgttgtagatgacattgatgatggttaatctctctttcatatttcttatcaacaattattgtaatgagagaattatcaacttcatttccattaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058643 |
tggtactgttgtagatgacattgatgatggttaacctctctttcatatttcttatcaacaattattgtaatgagagaattatcaacttcatttccattaa |
8058544 |
T |
|
| Q |
301 |
tacccttgttgtcatcttgcatttttcttctaagtttctcttctgcttcttgtaagaacttgaatttcggaggaggcgatgactttaatctattgaactc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8058543 |
tacccttgttgtcatcttgcatttttcttctaagtttctcttctgcttcttgtaagaacttgaatttcggaggaggcgatgactttaatctattgaactc |
8058444 |
T |
|
| Q |
401 |
tgcatcagttgttgattcaaaaagagggttgaatccatgttgattataagggctacaataaggactacaattcataggagtgaaaaaatgtggagatgct |
500 |
Q |
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| T |
8058443 |
tgcatcagttgttgattcaaaaagagggttgaatccatgttgattataagggctacaataaggactacaattcataggagtgaaaaaatgtggagatgct |
8058344 |
T |
|
| Q |
501 |
ataggtgtcaaataaggtgtttccacatctaacaaatcacctaagcttctacctcttgaatcctttccacatttaccatcttcggattctaaatcctctt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
8058343 |
ataggtgtcaaataaggtgtttccacatctaacagatcacctaagcttctacctcttgaatcctttccacatttaccgtcttcagattctaaatcctctt |
8058244 |
T |
|
| Q |
601 |
ttgattcttcaactatcgtgaacaagaatctcggatgacctaaaaggccgtcgtgatgatgt |
662 |
Q |
| |
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| T |
8058243 |
ttgattcttcaactattgtgaacaagaatctcggatgacctaaaaggccgtcgtgatgatgt |
8058182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 186 - 342
Target Start/End: Original strand, 24776995 - 24777147
Alignment:
| Q |
186 |
tgtgatgtgcttgaatggtactgttgtagatgacattgatgatggttaatctctctttcatatttcttatcaacaattattgtaatgagagaatt-atca |
284 |
Q |
| |
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|||||||||||||||| |||||||||| |||| |||||| || || ||| | ||||||||||| |||||||| |||||||||||||||| | |||| |
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| T |
24776995 |
tgtgatgtgcttgaataatactgttgtatatgaaattgattat---tagtctgt--ttcatatttctaatcaacaactattgtaatgagagaaatcatca |
24777089 |
T |
|
| Q |
285 |
acttcatttccattaatacccttgttgtcatcttgcatttttcttctaagtttctctt |
342 |
Q |
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|||| |||| |||||||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
24777090 |
actttattttcattaatacccttgttgttatcttgcaaatttcttctaagcttctctt |
24777147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 24777239 - 24777325
Alignment:
| Q |
334 |
gtttctcttctgcttcttgtaagaacttgaatttcggaggaggcgatgactttaatctattgaactctgcatcagttgttgattcaaa |
421 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |||| ||| |||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
24777239 |
gtttctcttttgcttcttgtaagaacttgaattttggag-aggtgatgactttaatctatggaactctgcatcagttgtcgattcaaa |
24777325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 500 - 569
Target Start/End: Original strand, 10429040 - 10429109
Alignment:
| Q |
500 |
tataggtgtcaaataaggtgtttccacatctaacaaatcacctaagcttctacctcttgaatcctttcca |
569 |
Q |
| |
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|||| |||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
10429040 |
tataagtgtcaaataaggtgttttcaaatctaacaaataacctaagcttctacctattgaatcctttcca |
10429109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 115
Target Start/End: Original strand, 6188447 - 6188480
Alignment:
| Q |
82 |
tctctaaatctaacggtctctacaactacaacat |
115 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
6188447 |
tctctaaatttaacggtctctacaactacaacat |
6188480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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