View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13395_low_6 (Length: 626)
Name: NF13395_low_6
Description: NF13395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13395_low_6 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 272
Target Start/End: Original strand, 9239187 - 9239450
Alignment:
| Q |
9 |
gacatcatcacaagcccaaataactttagtctagagaaactgattcccgatctcgaagaaaaaacgatcggcccaccgtactccaaaaacaaatcattgt |
108 |
Q |
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| T |
9239187 |
gacaccataacaagcccaaataactttagtctagagaaactgactcccgatctcgaagcaaaaacgatcggcccaccgtactccaaaaacaaatcatttt |
9239286 |
T |
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| Q |
109 |
ggctccccacaattccaggaccacataagaagacaccataattggccgaaatacttgaaactagacactaacccttcatcacaaagaaaaagtgatcggt |
208 |
Q |
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| T |
9239287 |
ggctccccacaactccagggccacataagaagacaccataatcggccgaaatacttgaaactagacactaacccttgatcacaaagaaaaagtgattggt |
9239386 |
T |
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| Q |
209 |
cggccaaaatccagatgaaaaattcctaagacagtcaacaggtggagcggtagcgtaaacataa |
272 |
Q |
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| T |
9239387 |
cgaccaaaatccaaatgaaaaattcctaagacagtcaacaggtggagcggtagcgcaaacataa |
9239450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 378 - 612
Target Start/End: Original strand, 9239556 - 9239788
Alignment:
| Q |
378 |
tcgcaagagctagcggcagctgagatggacccatatcagaggtcaccactagcagacgaagaaaaacaaacagcccccaaaacaaaataacccacaagct |
477 |
Q |
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| T |
9239556 |
tcgcaagagctagcggcagctgagatggacccatatcagaggtcaccacgagcagacgaagaaaaacaaacagcccccaaaacaaaataacccacaagct |
9239655 |
T |
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| Q |
478 |
cctcctcctcatcaccatattaaaaaactgaccatcacaaacaaacnnnnnnnnncatgttaacattccaacgccctaactcaacgccaacaatcaccac |
577 |
Q |
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| T |
9239656 |
cctcctcctcaacaccataataaaaaactgaccatcacaaaaaaa--aaaacacacacgttaacattccaacgccctaactcaacgccaacaatcaccac |
9239753 |
T |
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| Q |
578 |
tttatgttaccaacacacacaacgacccacatcac |
612 |
Q |
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| T |
9239754 |
tttatgttaccaacacacacaaccacccacatcac |
9239788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 84
Target Start/End: Complemental strand, 27713124 - 27713086
Alignment:
| Q |
46 |
aactgattcccgatctcgaagaaaaaacgatcggcccac |
84 |
Q |
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| T |
27713124 |
aactgattcccgatctcgaatcaaaaacgatcggcccac |
27713086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 3888 - 3827
Alignment:
| Q |
43 |
agaaactgattcccgatctcgaagaaaaaacgatcggcccaccgtactccaaaaacaaatca |
104 |
Q |
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| T |
3888 |
agaaactgactcccgatctcgaatcaaaattgatcggcccaccagactctaaaaacaaatca |
3827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 23144041 - 23143988
Alignment:
| Q |
216 |
aatccagatgaaaaattcctaagacagtcaacaggtggagcggtagcgtaaaca |
269 |
Q |
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| T |
23144041 |
aatccagatgacaaattcctaaagcaatcaacaggtggagcggtactgtaaaca |
23143988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 24712684 - 24712635
Alignment:
| Q |
55 |
ccgatctcgaagaaaaaacgatcggcccaccgtactccaaaaacaaatca |
104 |
Q |
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| T |
24712684 |
ccgatctcgaataaaaaatgaccggcccaccatactccagaaacaaatca |
24712635 |
T |
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