View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13396_high_1 (Length: 638)
Name: NF13396_high_1
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13396_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 628
Target Start/End: Complemental strand, 37012290 - 37011664
Alignment:
| Q |
1 |
gacaaatattacacacataaaaaactattctttgagagacgtcaccgcgcctagcacatgactgggagcacatgcaccacgatcacattgacactttcaa |
100 |
Q |
| |
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||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37012290 |
gacaaatattacacata-aaaaaactattctttgagagacgtcaccacgcctagcacatgactgggagcacatgcaccacgatcacattgacactttcaa |
37012192 |
T |
|
| Q |
101 |
aacttcttcagaaatcaaagaaaacatggaactttgttaatgattcttaaacaaaaaatattaaaatgaatataccaaaagttactaacaaacaaagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37012191 |
aacttcttcagaaatcaaagaaaacatggaactttgttaatgattcttaaacaaaaaatattaaaatgaatataccaaaagttactaacaaacaaagtgt |
37012092 |
T |
|
| Q |
201 |
atgtagtgaattgaagtgtgaggtaagtcataaatttatattgcataaaagatgaggttttatttttaaataatacatccaagtatacaaatcaaaatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37012091 |
atgtagtgaattgaagtgtgaggtaagtcataaatttatattgcataaatgaagaggttttatttttaaataatacatccaagtatacaaatcaaaatta |
37011992 |
T |
|
| Q |
301 |
attttgaaagtacgaacaataaaatctacatttaaccttacaaaattttgaattctttctctaataattcttctatgtcttctctctaaaagaacaaccg |
400 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37011991 |
attttgaaagtacgaagaataaaatctacatttaatcttacaaaattttgaattctttttctaataattcttctatgtcttctctctaaaagaacaaccg |
37011892 |
T |
|
| Q |
401 |
cgccaccctctttccctcttaatccaatctctttttggttgatgcaggcgtggtggtgaggggtgcgatggtcggtgctaaccacctgcaccacctcgaa |
500 |
Q |
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| T |
37011891 |
cgccaccctctttccctcttaatccaatctctttttggttgatgcaggcgtggtggtgaggggtgcgatggtcggtgctaaccacctgcaccacctcgaa |
37011792 |
T |
|
| Q |
501 |
accaaatctacgggcggttctaccggcggttggtcgggttgttggtcatgttttcgttcaataccggatgtgatggtggtttccgtcttctctccggtag |
600 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37011791 |
accagatctactggcggttctaccggcggttggtcgggttgttggttgtgttttcgttcgataccggatgtgatggtggtttccgtcttctctccggtag |
37011692 |
T |
|
| Q |
601 |
ctttggtttaaaccaattttgttttcat |
628 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
37011691 |
ctttggtttaaaccaattttgttttcat |
37011664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 113 - 313
Target Start/End: Complemental strand, 37004971 - 37004775
Alignment:
| Q |
113 |
aatcaaagaaaacatggaactttgttaatgattcttaaacaaaaaatattaaaatgaatataccaaaagttactaacaaacaaagtgtatgtagtgaatt |
212 |
Q |
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||||||| ||||||| ||| ||||||||||||||||||||||||||| || | ||| |||||||||||| | |||| ||||||| ||||||||||| |
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| T |
37004971 |
aatcaaaacaaacatgaaacattgttaatgattcttaaacaaaaaata--aagaagaaaataccaaaagttgtttccaaataaagtgtctgtagtgaatt |
37004874 |
T |
|
| Q |
213 |
gaagtgtgaggtaagtcataaatttatattgcataaaagatgaggttttatttttaaataatacatccaagtatacaaatcaaaattaattttgaaagta |
312 |
Q |
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|||||| |||||||||| ||||||||||||||||||| | |||||| ||||| |||| |||| |||||||| ||||| ||||||||||||| |||||| |
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| T |
37004873 |
gaagtg--aggtaagtcacaaatttatattgcataaaataagaggttatatttctaaacaatatatccaagtgtacaagacaaaattaattttaaaagta |
37004776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 36993023 - 36992914
Alignment:
| Q |
176 |
caaaagttactaacaaacaaagtgtatgtagtgaattgaagtgtgaggtaagtcataaatttatattgcataaaagatgaggttttatttttaaataata |
275 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| | |||||| ||||| |||| |||| |
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| T |
36993023 |
caaaagttattgacaaacaaagtgtacgtagtgaattgaagtttgaggtaagtcacaaatttatattgcataaaataagaggttatatttctaaacaata |
36992924 |
T |
|
| Q |
276 |
catccaagta |
285 |
Q |
| |
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||| ||||| |
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| T |
36992923 |
tatcgaagta |
36992914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 529 - 627
Target Start/End: Complemental strand, 29689815 - 29689717
Alignment:
| Q |
529 |
gttggtcgggttgttggtcatgttttcgttcaataccggatgtgatggtggtttccgtcttctctccggtagctttggtttaaaccaattttgttttca |
627 |
Q |
| |
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||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
29689815 |
gttggtcgggttgttggctgtgttttcgttcgatttcggatgtgatggtggtttccgtcttctctccgatggctttggtttaaaccggttttgttttca |
29689717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 37009182 - 37009111
Alignment:
| Q |
219 |
tgaggtaagtcataaatttatattgcataaaagatgaggttttatttttaaataatacatccaagtatacaa |
290 |
Q |
| |
|
|||||||||||| |||||||||||||| | || | |||||| |||||||||| |||| ||| |||| ||||| |
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| T |
37009182 |
tgaggtaagtcacaaatttatattgcacacaataagaggttatatttttaaacaatatatcaaagtgtacaa |
37009111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 129 - 221
Target Start/End: Original strand, 44758404 - 44758496
Alignment:
| Q |
129 |
gaactttgttaatgattcttaaacaaaaaatattaaaatgaatataccaaaagttactaacaaacaaagtgtatgtagtgaattgaagtgtga |
221 |
Q |
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|||| |||||||||||||||||||||| ||||| ||| ||| ||||||| ||||||| ||||||||||||||| ||||| |||||||||||| |
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| T |
44758404 |
gaacattgttaatgattcttaaacaaacaatatgtaaaagaaaataccaacagttactcacaaacaaagtgtatatagtgcattgaagtgtga |
44758496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 565 - 613
Target Start/End: Original strand, 20125071 - 20125119
Alignment:
| Q |
565 |
cggatgtgatggtggtttccgtcttctctccggtagctttggtttaaac |
613 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
20125071 |
cggatgtgatggtggttttcgtcttctctccggtggctttggtttaaac |
20125119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 614
Target Start/End: Complemental strand, 37788032 - 37787974
Alignment:
| Q |
556 |
gttcaataccggatgtgatggtggtttccgtcttctctccggtagctttggtttaaacc |
614 |
Q |
| |
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|||| |||||||||||||||||||||||| | |||||| |||| | | ||||||||||| |
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| T |
37788032 |
gttcgataccggatgtgatggtggtttccattttctcttcggtggatgtggtttaaacc |
37787974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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