View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13396_high_12 (Length: 302)
Name: NF13396_high_12
Description: NF13396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13396_high_12 |
 | |
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| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 30650843 - 30650541
Alignment:
| Q |
1 |
tcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30650843 |
tcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatc |
30650744 |
T |
|
| Q |
101 |
caaaacgttttaaagattttaaaggaagatttgatagaatgaataatgcaagatcttcccgtatgtggttactaacc-nnnnnnncacctaatggtttgg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
30650743 |
caaaacgttttaaagattttaaaggaagttttgatagaatgaataatgcaagatcttccggtatgtggttactaaccttttttttcacctaatggtttgg |
30650644 |
T |
|
| Q |
200 |
ccatagtgcaccgagaaagcaaagcaaaacggagaaggcagagagatatatcgaactgacttaccaacacgttgtcgtcgatatgaagaggatggatgaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30650643 |
ccatagtgcaccgagaaagcaaagcaaaacggagaaggcagagagatatatcgaactgacttaccaacacattgtcgtcgatatgaagaggatggatgaa |
30650544 |
T |
|
| Q |
300 |
tga |
302 |
Q |
| |
|
||| |
|
|
| T |
30650543 |
tga |
30650541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 31777189 - 31776882
Alignment:
| Q |
1 |
tcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31777189 |
tcatcatagtaagagtgaggaatatatatgaaattcgtgcggaacatggtgatgaaataagagttttcaaataagagagaccatgttttctttacacatc |
31777090 |
T |
|
| Q |
101 |
caaaacgttttaaagattttaaaggaagatttgatagaatgaataatgcaagatcttcccgtatgtggttactaaccnnnnnnncacctaatggtttggc |
200 |
Q |
| |
|
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31777089 |
c-aaacgctttaaagattttaatggaagttttgatagaatgaataatgcaagttcttctggtatgtggttactaacctttttttcacctgatggtttggc |
31776991 |
T |
|
| Q |
201 |
catagtgcaccgagaaagcaaagcaaaacggagaaggc------agagagatatatcgaactgacttaccaacacgttgtcgtc-gatatgaagaggatg |
293 |
Q |
| |
|
||| |||| | |||||||||||||| || | |||||| ||| ||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
31776990 |
catcgtgcgcggagaaagcaaagcagaaagtggaaggcagtatgagaaagatatatcgatctgacttaccaacacgttgctgtctgatatgaagaggatg |
31776891 |
T |
|
| Q |
294 |
gatgaatga |
302 |
Q |
| |
|
||||||||| |
|
|
| T |
31776890 |
gatgaatga |
31776882 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 25627459 - 25627283
Alignment:
| Q |
1 |
tcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||||||||||| |||||| || |||| |
|
|
| T |
25627459 |
tcatcatagtaagagtgaggaatagatatgaaattattgcggaacatggtcatgaaagaagggttttcaaataagagagaccatgatttcttaacgcatc |
25627360 |
T |
|
| Q |
101 |
caaaacgttttaaagattttaaaggaagatttgatagaatgaataatgcaagatcttcccgtatgtggttactaacc |
177 |
Q |
| |
|
|| |||| || |||||||| | ||||| |||||||||| |||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
25627359 |
cagaacgcttcaaagatttgattggaagttttgatagaactaataatgcaagatcctccggtacaaggttactaacc |
25627283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 30249147 - 30248991
Alignment:
| Q |
1 |
tcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatc |
100 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||| | |||||||||||||||| | |||||||||||||||||||||||||| | | ||||| |
|
|
| T |
30249147 |
tcatcatagtaggagtgagaaatagatgtgaaattatccctgaacatggtgatgaaaacatggttttcaaataagagagaccatgttttgtgtgcacatt |
30249048 |
T |
|
| Q |
101 |
caaaacgttttaaagattttaaaggaagatttgatagaatgaataatgcaagatctt |
157 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| | || ||| |||||||||||| |
|
|
| T |
30249047 |
caaaacgctttaaagattttaaaggaagttttgacaaaactaatgatgcaagatctt |
30248991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 4027176 - 4027000
Alignment:
| Q |
1 |
tcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatc |
100 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||| ||| | |||||||| |
|
|
| T |
4027176 |
tcatcgtagtaggagtgagaaatagatatgaaattagtcccgaacatggtgatgaaatattggttttcaaataagagagaccatggtttgtgtacacatc |
4027077 |
T |
|
| Q |
101 |
caaaacgttttaaagattttaaaggaagatttgatagaatgaataatgcaagatcttcccgtatgtggttactaacc |
177 |
Q |
| |
|
|||||||||| ||||||||||||||||| || || | || |||||||||||||||| |||||||||| |||||| |
|
|
| T |
4027076 |
caaaacgtttcaaagattttaaaggaagtttcgacaaaactaataatgcaagatcttgaggtatgtggtttctaacc |
4027000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 12646337 - 12646270
Alignment:
| Q |
25 |
gatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctt |
92 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||| || |||| |||||| |||||||||| |||||| |
|
|
| T |
12646337 |
gatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaataaaagagaccatggtttctt |
12646270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 15338992 - 15339020
Alignment:
| Q |
10 |
taagagtgaggaatagatatgaaattagt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15338992 |
taagagtgaggaatagatatgaaattagt |
15339020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 15428057 - 15428085
Alignment:
| Q |
10 |
taagagtgaggaatagatatgaaattagt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15428057 |
taagagtgaggaatagatatgaaattagt |
15428085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 15519361 - 15519389
Alignment:
| Q |
10 |
taagagtgaggaatagatatgaaattagt |
38 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15519361 |
taagagtgaggaatagatatgaaattagt |
15519389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 29353252 - 29353408
Alignment:
| Q |
1 |
tcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatc |
100 |
Q |
| |
|
||||| ||||| |||||| |||||||||||||||| | ||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
29353252 |
tcatcgtagtacgagtgataaatagatatgaaattatccccgaacatggtgatgaaattagggttttcaaataagagagaccatgttttatttacgcatc |
29353351 |
T |
|
| Q |
101 |
caaaacgttttaaagattttaaaggaagatttgatagaatgaataatgcaagatctt |
157 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||| | || |||||||||||||||| |
|
|
| T |
29353352 |
caaaacgcttcaaagattttaaaggaagttttgacaaaactaataatgcaagatctt |
29353408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 34324603 - 34324428
Alignment:
| Q |
1 |
tcatcatagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatc |
100 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||| | |||||||||||||||| | |||||||||||||||||||||||||| | |||||||| |
|
|
| T |
34324603 |
tcatcgtagtaggagtgagaaatagatatgaaattatccctgaacatggtgatgaaacactggttttcaaataagagagaccatgttttgtgtacacatc |
34324504 |
T |
|
| Q |
101 |
caaaacgttttaaagattttaaaggaagatttgatagaatgaataatgcaagatcttcccgtatgtggttactaacc |
177 |
Q |
| |
|
||||||| || |||||||||||||||| || || | || |||||||||||||||| |||||||||| |||||| |
|
|
| T |
34324503 |
caaaacg-ttcaaagattttaaaggaactttcgacaaaactaataatgcaagatcttgaggtatgtggtttctaacc |
34324428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 44913365 - 44913451
Alignment:
| Q |
54 |
gaaataagaattttcaaataagagagaccatgttttctttacacatccaaaacgttttaaagattttaaaggaagatttgatagaat |
140 |
Q |
| |
|
|||| |||| ||||||||||||| || ||||| ||| ||| |||||||| ||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
44913365 |
gaaacaagagttttcaaataagaaagtccatggtttacatacgcatccaaatcgttttaaagattttaaagaaagttttgacagaat |
44913451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 44919366 - 44919462
Alignment:
| Q |
59 |
aagaattttcaaataagagagaccatgttttctttacacatccaaaacgttttaaagattttaaaggaagatttgatagaatgaataatgcaagatc |
155 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||| ||||||| |||| | || ||||||||||||||||| ||||| ||||| | ||||||||||| |
|
|
| T |
44919366 |
aagagttttcaaataagagagcccatgatttacgtacacattcaaatggcttaaaagattttaaaggaagttttgacagaatagagaatgcaagatc |
44919462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 51869263 - 51869137
Alignment:
| Q |
8 |
agtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatccaaaacg |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| || | ||||||| || | |||||||||||||||||||| ||| | | |||||||||| || |
|
|
| T |
51869263 |
agtatgagtgaggaatagatatgaaattagtgcagaagttgttcatgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcg |
51869164 |
T |
|
| Q |
108 |
ttttaaagattttaaaggaagatttga |
134 |
Q |
| |
|
||| ||||||||||| ||||| ||||| |
|
|
| T |
51869163 |
tttcaaagattttaacggaagttttga |
51869137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 34358 - 34488
Alignment:
| Q |
25 |
gatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatccaaaacgttttaaagattttaaag |
124 |
Q |
| |
|
|||||||||| ||||| ||||| | ||||||| || ||| ||||||||| ||||||||| ||| ||| || | |||||||||| ||||||| | || |
|
|
| T |
34358 |
gatatgaaatatttgcggtacatgtttatgaaattaggattctcaaataagtgagaccatgatttacgtacgcaactaaaacgttttgaagatttaagag |
34457 |
T |
|
| Q |
125 |
gaagatttgatagaatgaataatgcaagatc |
155 |
Q |
| |
|
| | |||||||||||||| ||||||||||| |
|
|
| T |
34458 |
gcaattttgatagaatgaaaaatgcaagatc |
34488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 17095 - 17157
Alignment:
| Q |
23 |
tagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatg |
85 |
Q |
| |
|
|||||| ||||||| |||| ||| || | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
17095 |
tagataagaaattattgcgaaacttgttcatgaaataagaattatcaattaagagagaccatg |
17157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 287479 - 287537
Alignment:
| Q |
63 |
attttcaaataagagagaccatgttttctttacacatccaaaacgttttaaagatttta |
121 |
Q |
| |
|
||||||||| ||||||| ||||| ||| |||||||||||| |||||||||||||||| |
|
|
| T |
287479 |
attttcaaacaagagagtccatgatttacatacacatccaaatcgttttaaagatttta |
287537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 20425869 - 20425736
Alignment:
| Q |
7 |
tagtaagagtgaggaatagatatgaaattagtgcggaacatggtgatgaaataagaattttcaaataagagagaccatgttttctttacacatccaaaac |
106 |
Q |
| |
|
||||||||||||| |||||||| | |||||||| ||| | ||||||| ||| | ||||||||| |||||||||| || ||| ||| |||| | |
|
|
| T |
20425869 |
tagtaagagtgagacttagatatgcagttagtgcgaaactcattcatgaaatgagagtcttcaaataaaagagaccatgcattgcatacgcattcaaatc |
20425770 |
T |
|
| Q |
107 |
gttttaaagattttaaaggaagatttgatagaat |
140 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
20425769 |
gtttcaaagattttaaaggaagttttgacagaat |
20425736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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